| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102929
Identifier: 222102929
GI number: 222102929
Start: 615296
End: 615505
Strand: Reverse
Name: 222102929
Synonym: Avi_7685
Alternate gene names: NA
Gene position: 615505-615296 (Counterclockwise)
Preceding gene: 222102930
Following gene: 222102928
Centisome position: 97.42
GC content: 60.0
Gene sequence:
>210_bases CTGGCGGGCTGGGCAGCCCCATGCCGCAAGACGCGTGGTGGCCAGCCGCGCTATATTGATCTGGCGATCGAAACCACGCC GATGCTGGGCATGAGATTCGAATTGTGTTTGCGCCAAGCCGAGGGTCTTTTGAACTCTGTTTTGGACATGATGGCGACGG ATTTGGCTGTGCCCGAGCACACCACGCTGAGCCGGAGGGCCAGAATCTGA
Upstream 100 bases:
>100_bases CGCATATCGGTAAGATGAAGTTGAAAGTGGCGAACTGGGCGGAATATGAAGCCGGCCTTCGCCGCGTGGCAGTTTAACCC TTTGGATAGCGCCAGAAGCG
Downstream 100 bases:
>100_bases GAGCCATCAGTCAGATGCAACGACCACCAGCCTTTGGCGACTGATCGGCGCGACAAACCGTCGAAAGCTCGGAAGCGGCC CGGGGCACTGCGCCTCTCGG
Product: transposase
Products: NA
Alternate protein names: Transposase; Transposase IS4 Family Protein; ISSpo9 Transposase
Number of amino acids: Translated: 69; Mature: 68
Protein sequence:
>69_residues MAGWAAPCRKTRGGQPRYIDLAIETTPMLGMRFELCLRQAEGLLNSVLDMMATDLAVPEHTTLSRRARI
Sequences:
>Translated_69_residues MAGWAAPCRKTRGGQPRYIDLAIETTPMLGMRFELCLRQAEGLLNSVLDMMATDLAVPEHTTLSRRARI >Mature_68_residues AGWAAPCRKTRGGQPRYIDLAIETTPMLGMRFELCLRQAEGLLNSVLDMMATDLAVPEHTTLSRRARI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 7703; Mature: 7572
Theoretical pI: Translated: 8.80; Mature: 8.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 7.2 %Met (Translated Protein) 10.1 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 5.9 %Met (Mature Protein) 8.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGWAAPCRKTRGGQPRYIDLAIETTPMLGMRFELCLRQAEGLLNSVLDMMATDLAVPEH CCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC TTLSRRARI CCCHHCCCC >Mature Secondary Structure AGWAAPCRKTRGGQPRYIDLAIETTPMLGMRFELCLRQAEGLLNSVLDMMATDLAVPEH CCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC TTLSRRARI CCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA