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The map label for this gene is 222102925

Identifier: 222102925

GI number: 222102925

Start: 609978

End: 611372

Strand: Direct

Name: 222102925

Synonym: Avi_7680

Alternate gene names: NA

Gene position: 609978-611372 (Clockwise)

Preceding gene: 222102924

Following gene: 222102933

Centisome position: 96.55

GC content: 54.62

Gene sequence:

>1395_bases
ATGAAAACCCATCTCAAGCAACTTGTTATCCTCAGTGCTGCATACGGAGTGCTGGCAAGCGGACTTCCTGCCGTAGCAGC
CGATGCCAACACCCCTGCCGATCCTTCCATCGCGAAGGCTCCAGACCCGCAGGCCCCTCCTCCCGGCCCCTTGACCGGCC
TTGGACACACGCTCCATGACGCCGGTTTTGATGTCCGCATCAATTTCGTCAATCTCTATGCAAATGCGTCAGATTTCGGG
TTTGATCCGGGCCATTCTGGTAACTTCGGCTTTCTGATGTTCGACACGACATACCATATATCAGACATGTTCAAGATCAA
CTGGCAGGAAACGGTCAACATTCCCAGGCACAATGCCAATCAGTATCTGTTTCAAGTCTCGAATGCCTTTTACGCTACGG
ACCCTTCTCTCGATAGTTCAACCGATCTTACACGCCTTACCCTCCAGGGGGATTTTTTTGACGGAAAGCTGGAGGTCGAG
GGCGGTCGGCTCAACATGTGGCCGGAGTTTTTCAGGTCAGAGTTCTGCGGTGGCAAGGGGTGCATCTCGCAAACCCGTGC
GTTGGTGTTAAGCGCTCCCGGCAACACCGTTGCGCAATGGGGTGGCCGCGTTGGCTACAATCTCACGCCGGATCTCTCCC
TCGGTGGCGTCATCACCGAGAACAACACAGAAAACTGGCAGACAGGATCGGGCTGGAACTGGGGGAGAGGCGATTCTGAC
GGTTATACCGCCGTGGTCCACCTCGCCCAGCGGCAAAATTTTCTGGAGACAGCGAAGCCGCTTAACTATGAAATTGGTGG
TTATCGAAGCTCTGCATCCTACACGGACGCGCTATACGGCACAGGCTGGGGCAATCCAACCTTTGGCGCGAACCAGACAG
TGATCGAACATGACGGGGGATCAAACGGGGTTTTTGCTCAGGTTCGAAAAGTTCTCTGGAGTGATCCCGATGGAAGCCCC
TTCCCCGAAAACATCGCGGTTTCAGGCGGCATCTTCCACACGTTCGGAGACGGTCAATCCTATCCGTGGGAAGCTTATGG
CAGCATTGAATATGGCGGCTTCTGGAAAGCTAACCCCCTCACATCTATAGGCGCGACGGTTCACTATATTGGCCTCAGTG
AAAAACGTGCCCAATACGAAACCAACGCGCGCCGGTTTTTGACAGGCATCTACGACCGGCAGCCGCGAGACACGTTCCAG
TTCGATCTGCACGGACGGACAGGAATAGGCCCCGCTGGATTTCTTGAGTTTGGGGCATCTTACGTCAAGGATCCCAACAC
AACCTACCTTGCTGACTATTCCACCTCAAGAATGAAGAACGGCTGGACCATCTATGCAGCCATTGTCTTCGACCTTGGAA
CCACTCTGGGGCTATCACCACCGCCCCAACCCTAA

Upstream 100 bases:

>100_bases
CTGACGGATTCCAGACCTGACCTTCACACAAACAGCAGCGTCGAAACGTCCCGGTATAACCCGGCGACCCATCCTATCCA
TTTATCTCGGGGGGAGAAAA

Downstream 100 bases:

>100_bases
ACCTTTCCGCTCTCTTCCCAAGCCTGCAACAAGAGGTCGGACTGTCATTTGTCTTCACTGGCAAGTTTGCTCAACGGGTT
TCTAAGCCAGGCTTAGAAAC

Product: porin B

Products: NA

Alternate protein names: Carbohydrate-Selective Porin OprB; Carbohydrate-Selective Porin Protein; Porin B; Porin B Carbohydrate-Selective OprB

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
MKTHLKQLVILSAAYGVLASGLPAVAADANTPADPSIAKAPDPQAPPPGPLTGLGHTLHDAGFDVRINFVNLYANASDFG
FDPGHSGNFGFLMFDTTYHISDMFKINWQETVNIPRHNANQYLFQVSNAFYATDPSLDSSTDLTRLTLQGDFFDGKLEVE
GGRLNMWPEFFRSEFCGGKGCISQTRALVLSAPGNTVAQWGGRVGYNLTPDLSLGGVITENNTENWQTGSGWNWGRGDSD
GYTAVVHLAQRQNFLETAKPLNYEIGGYRSSASYTDALYGTGWGNPTFGANQTVIEHDGGSNGVFAQVRKVLWSDPDGSP
FPENIAVSGGIFHTFGDGQSYPWEAYGSIEYGGFWKANPLTSIGATVHYIGLSEKRAQYETNARRFLTGIYDRQPRDTFQ
FDLHGRTGIGPAGFLEFGASYVKDPNTTYLADYSTSRMKNGWTIYAAIVFDLGTTLGLSPPPQP

Sequences:

>Translated_464_residues
MKTHLKQLVILSAAYGVLASGLPAVAADANTPADPSIAKAPDPQAPPPGPLTGLGHTLHDAGFDVRINFVNLYANASDFG
FDPGHSGNFGFLMFDTTYHISDMFKINWQETVNIPRHNANQYLFQVSNAFYATDPSLDSSTDLTRLTLQGDFFDGKLEVE
GGRLNMWPEFFRSEFCGGKGCISQTRALVLSAPGNTVAQWGGRVGYNLTPDLSLGGVITENNTENWQTGSGWNWGRGDSD
GYTAVVHLAQRQNFLETAKPLNYEIGGYRSSASYTDALYGTGWGNPTFGANQTVIEHDGGSNGVFAQVRKVLWSDPDGSP
FPENIAVSGGIFHTFGDGQSYPWEAYGSIEYGGFWKANPLTSIGATVHYIGLSEKRAQYETNARRFLTGIYDRQPRDTFQ
FDLHGRTGIGPAGFLEFGASYVKDPNTTYLADYSTSRMKNGWTIYAAIVFDLGTTLGLSPPPQP
>Mature_464_residues
MKTHLKQLVILSAAYGVLASGLPAVAADANTPADPSIAKAPDPQAPPPGPLTGLGHTLHDAGFDVRINFVNLYANASDFG
FDPGHSGNFGFLMFDTTYHISDMFKINWQETVNIPRHNANQYLFQVSNAFYATDPSLDSSTDLTRLTLQGDFFDGKLEVE
GGRLNMWPEFFRSEFCGGKGCISQTRALVLSAPGNTVAQWGGRVGYNLTPDLSLGGVITENNTENWQTGSGWNWGRGDSD
GYTAVVHLAQRQNFLETAKPLNYEIGGYRSSASYTDALYGTGWGNPTFGANQTVIEHDGGSNGVFAQVRKVLWSDPDGSP
FPENIAVSGGIFHTFGDGQSYPWEAYGSIEYGGFWKANPLTSIGATVHYIGLSEKRAQYETNARRFLTGIYDRQPRDTFQ
FDLHGRTGIGPAGFLEFGASYVKDPNTTYLADYSTSRMKNGWTIYAAIVFDLGTTLGLSPPPQP

Specific function: Unknown

COG id: COG3659

COG function: function code M; Carbohydrate-selective porin

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50466; Mature: 50466

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTHLKQLVILSAAYGVLASGLPAVAADANTPADPSIAKAPDPQAPPPGPLTGLGHTLHD
CCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
AGFDVRINFVNLYANASDFGFDPGHSGNFGFLMFDTTYHISDMFKINWQETVNIPRHNAN
CCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECEEEECEEEEECHHHCCCCCCCCCC
QYLFQVSNAFYATDPSLDSSTDLTRLTLQGDFFDGKLEVEGGRLNMWPEFFRSEFCGGKG
EEEEEECCEEEECCCCCCCCCCEEEEEEECCEECCEEEEECCEECCCHHHHHHHHCCCCC
CISQTRALVLSAPGNTVAQWGGRVGYNLTPDLSLGGVITENNTENWQTGSGWNWGRGDSD
CCCCCEEEEEECCCCHHHHCCCEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
GYTAVVHLAQRQNFLETAKPLNYEIGGYRSSASYTDALYGTGWGNPTFGANQTVIEHDGG
CCEEEEEEHHHHHHHHHCCCCCEECCCEECCCCCCCCEEECCCCCCCCCCCCEEEECCCC
SNGVFAQVRKVLWSDPDGSPFPENIAVSGGIFHTFGDGQSYPWEAYGSIEYGGFWKANPL
CCCHHHHHHHHHHCCCCCCCCCCCEEECCCEEEECCCCCCCCCCCCCCEEECCEECCCCC
TSIGATVHYIGLSEKRAQYETNARRFLTGIYDRQPRDTFQFDLHGRTGIGPAGFLEFGAS
CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHCHH
YVKDPNTTYLADYSTSRMKNGWTIYAAIVFDLGTTLGLSPPPQP
HHCCCCCEEEEECCHHHCCCCCEEEEEEEEHHCCCCCCCCCCCC
>Mature Secondary Structure
MKTHLKQLVILSAAYGVLASGLPAVAADANTPADPSIAKAPDPQAPPPGPLTGLGHTLHD
CCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
AGFDVRINFVNLYANASDFGFDPGHSGNFGFLMFDTTYHISDMFKINWQETVNIPRHNAN
CCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECEEEECEEEEECHHHCCCCCCCCCC
QYLFQVSNAFYATDPSLDSSTDLTRLTLQGDFFDGKLEVEGGRLNMWPEFFRSEFCGGKG
EEEEEECCEEEECCCCCCCCCCEEEEEEECCEECCEEEEECCEECCCHHHHHHHHCCCCC
CISQTRALVLSAPGNTVAQWGGRVGYNLTPDLSLGGVITENNTENWQTGSGWNWGRGDSD
CCCCCEEEEEECCCCHHHHCCCEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
GYTAVVHLAQRQNFLETAKPLNYEIGGYRSSASYTDALYGTGWGNPTFGANQTVIEHDGG
CCEEEEEEHHHHHHHHHCCCCCEECCCEECCCCCCCCEEECCCCCCCCCCCCEEEECCCC
SNGVFAQVRKVLWSDPDGSPFPENIAVSGGIFHTFGDGQSYPWEAYGSIEYGGFWKANPL
CCCHHHHHHHHHHCCCCCCCCCCCEEECCCEEEECCCCCCCCCCCCCCEEECCEECCCCC
TSIGATVHYIGLSEKRAQYETNARRFLTGIYDRQPRDTFQFDLHGRTGIGPAGFLEFGAS
CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHCHH
YVKDPNTTYLADYSTSRMKNGWTIYAAIVFDLGTTLGLSPPPQP
HHCCCCCEEEEECCHHHCCCCCEEEEEEEEHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA