| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102924
Identifier: 222102924
GI number: 222102924
Start: 608583
End: 609776
Strand: Direct
Name: 222102924
Synonym: Avi_7679
Alternate gene names: NA
Gene position: 608583-609776 (Clockwise)
Preceding gene: 222102923
Following gene: 222102925
Centisome position: 96.33
GC content: 56.2
Gene sequence:
>1194_bases ATGACCAATCTTGATACAAAGGGTACCCGCACAGCCCTTATTGTCGGTCATGCGGCCGGTATGATCGATATGGTCTCTCT TCCCATTTGGGTCGGTGGACTGGTCGGTGGCTATGGCTATTCATCCGCTCAAGCCGGAGGACTTGTCACCACATTTCTGA TTGGGGTGGTGATTGCCAGTTGCGGCCTTGCGACGCTTTTCCATCGCTTTTCCATGCGTTGGGTGCCCGGTGCAGGCTTT AGCGGGGCTGCGCTGGCGTTCGCAGCACTCTGGATGGCATCAGGTTTCGGCAATTTTCTCGCACTTCACCTCTGTGCCGG TCTTTGCATCGGCACGGCTTTGTCAGCGGTTCATGGAACCATTGGCCGCACAAGCAATGCTCATCGCACATTTGCTTATG CCACCATTGGCTTTGGCATCTTCAGCGTTATCTTCATGGGCTTTGCCACGCAGGTGATTGCCGCAATGCAGCCACGCAAC CTGTTCTTGATTTTTGCCGGGGTTATGGCGATCGCTGCCGCAGTCAATTGGTTGCTTTTCCCCCACAGCGCCACCATGCC GAAGGCGGAGAAAAAACCATCGCCCAATTCCGGTCGCGTGCCGCGTTTTGAACCCGTCGTCTGGTTTCTCATCGCCGCTC TGCTGGGCATGAACTTCAATCAGGCCATGAATTTCAGCTTTGTTGAGCGCATTGCCAGTGACCATGATTGGCCAACATCC ACCATCAACGGCATTCTTGTGGGCGTTGCCTTTCTCAGCCTCATTCCGGCCCCGCTCGCAGTGTTTTTTGAAAAAAAGCT TCATCCGGTTTATGTGGGCATAGTAGGCGTGCTGCTTCAGGCCGCTCTTTCGCTGGGCATAACCCATGCGCTCGACGTTC CCGGTTTTGCCGCCTCGGCAATCTTCATTCCCTTTGTCATGATCTTCTCGCACACATTTCTCTTCGGACTCATGTCGCGC GTGGAACCAACTGGCCGAGCAGTGGCGGCCAATCCGGCCATTACCATGGGCGGCGGAGCGCTTGGGCCTCTGGTTGGCGG CATTCTGGTCCAGACAATGGGCTATCATGGCCTCAGCCTTGCAACCGCTCTGGTGGCCACCTGTGTTGTGGCGGGACTAA TGCTGGTGCTGATGCGCCTGTTGCCCTCGCACGCCAGCAACGCACTAGCCCCAAAAAGGCACTGGCCATTGTGA
Upstream 100 bases:
>100_bases TGCGGCAGCTTGGCAAGCGGTTGGCAGCGATGCTCTGTCCCCAGCAGCCTATATTGGCTCAGCGCCCGATTGGTGAACTC TCCGCAGGCGGGAGGATCGC
Downstream 100 bases:
>100_bases CCCGTCACGACCAATAGGCTTAAGCCTGCAAGGCAAATGCCGCGTGCCCAAAAGCCACGCAACAACAGAAACATCTGGAG TGAGCCGGGCCGAAGAAAAA
Product: Permeases of the major facilitator superfamily
Products: NA
Alternate protein names: Facilitator Superfamily Permease; Facilitator Superfamily Protein; Permease; Permeases Of Facilitator Superfamily
Number of amino acids: Translated: 397; Mature: 396
Protein sequence:
>397_residues MTNLDTKGTRTALIVGHAAGMIDMVSLPIWVGGLVGGYGYSSAQAGGLVTTFLIGVVIASCGLATLFHRFSMRWVPGAGF SGAALAFAALWMASGFGNFLALHLCAGLCIGTALSAVHGTIGRTSNAHRTFAYATIGFGIFSVIFMGFATQVIAAMQPRN LFLIFAGVMAIAAAVNWLLFPHSATMPKAEKKPSPNSGRVPRFEPVVWFLIAALLGMNFNQAMNFSFVERIASDHDWPTS TINGILVGVAFLSLIPAPLAVFFEKKLHPVYVGIVGVLLQAALSLGITHALDVPGFAASAIFIPFVMIFSHTFLFGLMSR VEPTGRAVAANPAITMGGGALGPLVGGILVQTMGYHGLSLATALVATCVVAGLMLVLMRLLPSHASNALAPKRHWPL
Sequences:
>Translated_397_residues MTNLDTKGTRTALIVGHAAGMIDMVSLPIWVGGLVGGYGYSSAQAGGLVTTFLIGVVIASCGLATLFHRFSMRWVPGAGF SGAALAFAALWMASGFGNFLALHLCAGLCIGTALSAVHGTIGRTSNAHRTFAYATIGFGIFSVIFMGFATQVIAAMQPRN LFLIFAGVMAIAAAVNWLLFPHSATMPKAEKKPSPNSGRVPRFEPVVWFLIAALLGMNFNQAMNFSFVERIASDHDWPTS TINGILVGVAFLSLIPAPLAVFFEKKLHPVYVGIVGVLLQAALSLGITHALDVPGFAASAIFIPFVMIFSHTFLFGLMSR VEPTGRAVAANPAITMGGGALGPLVGGILVQTMGYHGLSLATALVATCVVAGLMLVLMRLLPSHASNALAPKRHWPL >Mature_396_residues TNLDTKGTRTALIVGHAAGMIDMVSLPIWVGGLVGGYGYSSAQAGGLVTTFLIGVVIASCGLATLFHRFSMRWVPGAGFS GAALAFAALWMASGFGNFLALHLCAGLCIGTALSAVHGTIGRTSNAHRTFAYATIGFGIFSVIFMGFATQVIAAMQPRNL FLIFAGVMAIAAAVNWLLFPHSATMPKAEKKPSPNSGRVPRFEPVVWFLIAALLGMNFNQAMNFSFVERIASDHDWPTST INGILVGVAFLSLIPAPLAVFFEKKLHPVYVGIVGVLLQAALSLGITHALDVPGFAASAIFIPFVMIFSHTFLFGLMSRV EPTGRAVAANPAITMGGGALGPLVGGILVQTMGYHGLSLATALVATCVVAGLMLVLMRLLPSHASNALAPKRHWPL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41582; Mature: 41451
Theoretical pI: Translated: 10.34; Mature: 10.34
Prosite motif: PS00221 MIP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNLDTKGTRTALIVGHAAGMIDMVSLPIWVGGLVGGYGYSSAQAGGLVTTFLIGVVIAS CCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH CGLATLFHRFSMRWVPGAGFSGAALAFAALWMASGFGNFLALHLCAGLCIGTALSAVHGT HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH IGRTSNAHRTFAYATIGFGIFSVIFMGFATQVIAAMQPRNLFLIFAGVMAIAAAVNWLLF HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC PHSATMPKAEKKPSPNSGRVPRFEPVVWFLIAALLGMNFNQAMNFSFVERIASDHDWPTS CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHCCCCCCHH TINGILVGVAFLSLIPAPLAVFFEKKLHPVYVGIVGVLLQAALSLGITHALDVPGFAASA HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHH IFIPFVMIFSHTFLFGLMSRVEPTGRAVAANPAITMGGGALGPLVGGILVQTMGYHGLSL HHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEECCCHHHHHHHHHHHHHHCCCHHHH ATALVATCVVAGLMLVLMRLLPSHASNALAPKRHWPL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure TNLDTKGTRTALIVGHAAGMIDMVSLPIWVGGLVGGYGYSSAQAGGLVTTFLIGVVIAS CCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH CGLATLFHRFSMRWVPGAGFSGAALAFAALWMASGFGNFLALHLCAGLCIGTALSAVHGT HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH IGRTSNAHRTFAYATIGFGIFSVIFMGFATQVIAAMQPRNLFLIFAGVMAIAAAVNWLLF HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC PHSATMPKAEKKPSPNSGRVPRFEPVVWFLIAALLGMNFNQAMNFSFVERIASDHDWPTS CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHCCCCCCHH TINGILVGVAFLSLIPAPLAVFFEKKLHPVYVGIVGVLLQAALSLGITHALDVPGFAASA HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHH IFIPFVMIFSHTFLFGLMSRVEPTGRAVAANPAITMGGGALGPLVGGILVQTMGYHGLSL HHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEECCCHHHHHHHHHHHHHHCCCHHHH ATALVATCVVAGLMLVLMRLLPSHASNALAPKRHWPL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA