| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102923
Identifier: 222102923
GI number: 222102923
Start: 607733
End: 608221
Strand: Direct
Name: 222102923
Synonym: Avi_7677
Alternate gene names: NA
Gene position: 607733-608221 (Clockwise)
Preceding gene: 222102918
Following gene: 222102924
Centisome position: 96.19
GC content: 58.08
Gene sequence:
>489_bases ATGGACTCGAAGACCCCTCCCTTACTTCCGCGTTTTCTGCGTGCCATCTACTGGTTTGACGAGGCGCTGAGAGCCTCCCA GGAGTTGCAAGGGCAAACACCGGTCACACGGGCGCAGGGCATGCTTTTGATCAACATTGCCCTTGGGGAGCGGCGTCCGA CGCGCTTGGCGCGTACCATGGGCGTCACCAAACAAGCGGTCAGCCTTATGCTGGGAGACCTGACCGCAGCGGGCTACATT TTTATCAAGCCAGACCCAGAAGATGCACGCGCATCACTCATTGAGTTCAGCCCGCAAGGTCAGACTGAATTGGAGAATAT CTTTGCCACGCTGGAGCACCTCGAAGACCATCTGGCAACGGTTTTAGGTCAGGACCGAATGTCCGTCCTGCGGGCCGCAT TGGGGATGGACTGGGGCACGCCACCCGCATTGGGATCCAAAGAGGCCCACACGCCTGATGCGACGGAAAGCGCGATCCAG AAAAAATGA
Upstream 100 bases:
>100_bases GCAGCCGCCAAGCAGGCCACACACCTTCATCGGCAAAAGCCTCTCAAAGAAGATTCCGACCGCAACAGCAATGACAAGCA AACACAGGGTAAATGCACGA
Downstream 100 bases:
>100_bases TGCCGACCGGCTTCATGGAATTGGGAGCGAATAGGGCTATTGCCGTGAAGTAAATATTATAGTCAATCTAATTGACTATT TTCAAAATGCCGATATCTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 162; Mature: 162
Protein sequence:
>162_residues MDSKTPPLLPRFLRAIYWFDEALRASQELQGQTPVTRAQGMLLINIALGERRPTRLARTMGVTKQAVSLMLGDLTAAGYI FIKPDPEDARASLIEFSPQGQTELENIFATLEHLEDHLATVLGQDRMSVLRAALGMDWGTPPALGSKEAHTPDATESAIQ KK
Sequences:
>Translated_162_residues MDSKTPPLLPRFLRAIYWFDEALRASQELQGQTPVTRAQGMLLINIALGERRPTRLARTMGVTKQAVSLMLGDLTAAGYI FIKPDPEDARASLIEFSPQGQTELENIFATLEHLEDHLATVLGQDRMSVLRAALGMDWGTPPALGSKEAHTPDATESAIQ KK >Mature_162_residues MDSKTPPLLPRFLRAIYWFDEALRASQELQGQTPVTRAQGMLLINIALGERRPTRLARTMGVTKQAVSLMLGDLTAAGYI FIKPDPEDARASLIEFSPQGQTELENIFATLEHLEDHLATVLGQDRMSVLRAALGMDWGTPPALGSKEAHTPDATESAIQ KK
Specific function: Unknown
COG id: COG1846
COG function: function code K; Transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17811; Mature: 17811
Theoretical pI: Translated: 5.70; Mature: 5.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSKTPPLLPRFLRAIYWFDEALRASQELQGQTPVTRAQGMLLINIALGERRPTRLARTM CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCEEEEEEECCCCCHHHHHHHH GVTKQAVSLMLGDLTAAGYIFIKPDPEDARASLIEFSPQGQTELENIFATLEHLEDHLAT HHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH VLGQDRMSVLRAALGMDWGTPPALGSKEAHTPDATESAIQKK HHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCC >Mature Secondary Structure MDSKTPPLLPRFLRAIYWFDEALRASQELQGQTPVTRAQGMLLINIALGERRPTRLARTM CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCEEEEEEECCCCCHHHHHHHH GVTKQAVSLMLGDLTAAGYIFIKPDPEDARASLIEFSPQGQTELENIFATLEHLEDHLAT HHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH VLGQDRMSVLRAALGMDWGTPPALGSKEAHTPDATESAIQKK HHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA