The gene/protein map for NC_011981 is currently unavailable.
Definition Agrobacterium vitis S4 plasmid pAtS4e, complete sequence.
Accession NC_011981
Length 631,775

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The map label for this gene is nikD [H]

Identifier: 222102878

GI number: 222102878

Start: 556807

End: 557595

Strand: Direct

Name: nikD [H]

Synonym: Avi_7617

Alternate gene names: 222102878

Gene position: 556807-557595 (Clockwise)

Preceding gene: 222102877

Following gene: 222102879

Centisome position: 88.13

GC content: 57.41

Gene sequence:

>789_bases
ATGATTCAGACCCTCTCCATCCACAATCTCACGGTTTACCCATCACACGCCGATGGTCATCCTGCTCTTGTCGATCATCT
CTCGCTTGAGCTCAAACGTGGCCGCATTCTTGCGCTGGTTGGTGCCAGTGGTTCGGGAAAATCCCTGACCTGTTCAGCAA
GCCTTGGCGTGGCACCTGCGGGTGTCACGGTTACCAATGGCACTCTGGCGCTGGATGGTAAGCCCGCCTTGCCTGCGGAC
TTGCGTGGCAAGACGGTGGCCACCATCATGCAAAATCCGCGCAGCGCCTTCAATCCGGTGCGAACCATGCGCCATCATGT
GGTTGAAACATTGAAGGCCACGGGCCGGTTACCGCCAGACAATGACCTGCAACAGGCTTTGGCCATTATGCACGACGTCG
GGCTTGAAGAGCCGCAGCGCATTCTGGAGATGCATGCTTTTGAGATGAGCGGCGGCATGTTGCAACGGATGATGATTGCC
CTTGCTCTCATGTCCGGCGCGCCCTTTCTGTTTGCCGATGAGCCAACCACGGACCTTGATCTGATTGTGCAAATGCAGGT
TCTGGATCTGATCGAGCGCGTGGCCAGACAACAGGGCTTGGGCGTTTTGCTCGTCACCCATGATATGGGCGTGGTGGCGC
GCTTGGCGGATGATGTGGCGGTGATTGATCAAGGCAAACTGGTTGAGACGGGCAGCGTCATGGACATTTTCCATGCGCCC
CAACATCCGGTAACACGCATGTTGGTGCAGGCGCACCTCTCCCTCTACGGTCTGGAGCTGGCGCAATGA

Upstream 100 bases:

>100_bases
CGGGATTAACCCTGTTTATCAGCGTCATGGCCTTCAACATTCTGGGCGATGCCCTGCGCTACAGGCTCGATCCCCATTTG
CGTGTGGAGCATGGTCACCA

Downstream 100 bases:

>100_bases
TACTGCTGCAAGCAAAACATCTGAGCAAACATTATCAGCACTACTCGCTGCTTGGCGCAAGTCCGGCCCGAACGGTTGTG
GAGGGTGTCTCGCTTTCCAT

Product: nickel transporter ATP-binding protein NikD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MIQTLSIHNLTVYPSHADGHPALVDHLSLELKRGRILALVGASGSGKSLTCSASLGVAPAGVTVTNGTLALDGKPALPAD
LRGKTVATIMQNPRSAFNPVRTMRHHVVETLKATGRLPPDNDLQQALAIMHDVGLEEPQRILEMHAFEMSGGMLQRMMIA
LALMSGAPFLFADEPTTDLDLIVQMQVLDLIERVARQQGLGVLLVTHDMGVVARLADDVAVIDQGKLVETGSVMDIFHAP
QHPVTRMLVQAHLSLYGLELAQ

Sequences:

>Translated_262_residues
MIQTLSIHNLTVYPSHADGHPALVDHLSLELKRGRILALVGASGSGKSLTCSASLGVAPAGVTVTNGTLALDGKPALPAD
LRGKTVATIMQNPRSAFNPVRTMRHHVVETLKATGRLPPDNDLQQALAIMHDVGLEEPQRILEMHAFEMSGGMLQRMMIA
LALMSGAPFLFADEPTTDLDLIVQMQVLDLIERVARQQGLGVLLVTHDMGVVARLADDVAVIDQGKLVETGSVMDIFHAP
QHPVTRMLVQAHLSLYGLELAQ
>Mature_262_residues
MIQTLSIHNLTVYPSHADGHPALVDHLSLELKRGRILALVGASGSGKSLTCSASLGVAPAGVTVTNGTLALDGKPALPAD
LRGKTVATIMQNPRSAFNPVRTMRHHVVETLKATGRLPPDNDLQQALAIMHDVGLEEPQRILEMHAFEMSGGMLQRMMIA
LALMSGAPFLFADEPTTDLDLIVQMQVLDLIERVARQQGLGVLLVTHDMGVVARLADDVAVIDQGKLVETGSVMDIFHAP
QHPVTRMLVQAHLSLYGLELAQ

Specific function: Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system [H]

COG id: COG0444

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI21536376, Length=237, Percent_Identity=29.957805907173, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI31657092, Length=213, Percent_Identity=28.169014084507, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI105990541, Length=214, Percent_Identity=26.6355140186916, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI116734710, Length=214, Percent_Identity=27.1028037383178, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI27436953, Length=208, Percent_Identity=26.4423076923077, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI46592898, Length=225, Percent_Identity=27.5555555555556, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI46592915, Length=225, Percent_Identity=27.5555555555556, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI46592964, Length=225, Percent_Identity=27.5555555555556, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI46592971, Length=225, Percent_Identity=27.5555555555556, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI46592956, Length=225, Percent_Identity=27.5555555555556, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI46592978, Length=225, Percent_Identity=27.5555555555556, Blast_Score=68, Evalue=7e-12,
Organism=Escherichia coli, GI1789890, Length=239, Percent_Identity=60.2510460251046, Blast_Score=284, Evalue=5e-78,
Organism=Escherichia coli, GI145693107, Length=259, Percent_Identity=39.3822393822394, Blast_Score=167, Evalue=7e-43,
Organism=Escherichia coli, GI1787759, Length=235, Percent_Identity=37.0212765957447, Blast_Score=154, Evalue=4e-39,
Organism=Escherichia coli, GI1789963, Length=253, Percent_Identity=33.201581027668, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI48994883, Length=253, Percent_Identity=32.8063241106719, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1788506, Length=262, Percent_Identity=34.7328244274809, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI1787548, Length=258, Percent_Identity=30.6201550387597, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI1789962, Length=234, Percent_Identity=35.042735042735, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1787500, Length=234, Percent_Identity=33.3333333333333, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI1789891, Length=218, Percent_Identity=32.1100917431193, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787758, Length=238, Percent_Identity=30.2521008403361, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787547, Length=261, Percent_Identity=28.735632183908, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1786398, Length=240, Percent_Identity=31.6666666666667, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI48994997, Length=250, Percent_Identity=31.6, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788225, Length=236, Percent_Identity=31.3559322033898, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87081791, Length=248, Percent_Identity=31.4516129032258, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI87081709, Length=224, Percent_Identity=25.8928571428571, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1787712, Length=225, Percent_Identity=28, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786345, Length=245, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786563, Length=213, Percent_Identity=30.0469483568075, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081834, Length=241, Percent_Identity=27.8008298755187, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082268, Length=205, Percent_Identity=29.2682926829268, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1789672, Length=242, Percent_Identity=28.5123966942149, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48994943, Length=221, Percent_Identity=26.2443438914027, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788165, Length=226, Percent_Identity=28.7610619469027, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789032, Length=236, Percent_Identity=25, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787029, Length=222, Percent_Identity=27.027027027027, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790162, Length=249, Percent_Identity=26.9076305220884, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787105, Length=229, Percent_Identity=31.8777292576419, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786703, Length=234, Percent_Identity=28.6324786324786, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789991, Length=234, Percent_Identity=26.9230769230769, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786803, Length=251, Percent_Identity=26.2948207171315, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788450, Length=237, Percent_Identity=28.6919831223629, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1790467, Length=242, Percent_Identity=24.3801652892562, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1787370, Length=226, Percent_Identity=24.3362831858407, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786872, Length=234, Percent_Identity=29.9145299145299, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787089, Length=232, Percent_Identity=29.7413793103448, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790739, Length=254, Percent_Identity=27.9527559055118, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87082267, Length=226, Percent_Identity=26.1061946902655, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787112, Length=215, Percent_Identity=27.906976744186, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788644, Length=131, Percent_Identity=31.2977099236641, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787164, Length=206, Percent_Identity=30.5825242718447, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1788002, Length=224, Percent_Identity=29.0178571428571, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789593, Length=221, Percent_Identity=24.8868778280543, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1786319, Length=212, Percent_Identity=27.3584905660377, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1786253, Length=219, Percent_Identity=26.4840182648402, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=225, Percent_Identity=30.2222222222222, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71983510, Length=214, Percent_Identity=30.8411214953271, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71983523, Length=214, Percent_Identity=30.8411214953271, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71983516, Length=214, Percent_Identity=30.8411214953271, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17565938, Length=228, Percent_Identity=29.3859649122807, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193208177, Length=250, Percent_Identity=27.2, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71992285, Length=241, Percent_Identity=26.9709543568465, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=212, Percent_Identity=26.8867924528302, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17569143, Length=213, Percent_Identity=27.6995305164319, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24641565, Length=227, Percent_Identity=32.15859030837, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24581383, Length=221, Percent_Identity=30.316742081448, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581385, Length=221, Percent_Identity=30.316742081448, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581387, Length=221, Percent_Identity=30.316742081448, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015857
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: =3.6.3.24 [H]

Molecular weight: Translated: 28113; Mature: 28113

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MIQTLSIHNLTVYPSHADGHPALVDHLSLELKRGRILALVGASGSGKSLTCSASLGVAPA
CCEEEEECEEEEECCCCCCCHHHHHHHHHEECCCEEEEEEECCCCCCEEEEECCCCCCCC
GVTVTNGTLALDGKPALPADLRGKTVATIMQNPRSAFNPVRTMRHHVVETLKATGRLPPD
CEEEECCEEEECCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
NDLQQALAIMHDVGLEEPQRILEMHAFEMSGGMLQRMMIALALMSGAPFLFADEPTTDLD
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCCHH
LIVQMQVLDLIERVARQQGLGVLLVTHDMGVVARLADDVAVIDQGKLVETGSVMDIFHAP
HHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCEEEECCCCEEECCCCCEECCCC
QHPVTRMLVQAHLSLYGLELAQ
CCHHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MIQTLSIHNLTVYPSHADGHPALVDHLSLELKRGRILALVGASGSGKSLTCSASLGVAPA
CCEEEEECEEEEECCCCCCCHHHHHHHHHEECCCEEEEEEECCCCCCEEEEECCCCCCCC
GVTVTNGTLALDGKPALPADLRGKTVATIMQNPRSAFNPVRTMRHHVVETLKATGRLPPD
CEEEECCEEEECCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
NDLQQALAIMHDVGLEEPQRILEMHAFEMSGGMLQRMMIALALMSGAPFLFADEPTTDLD
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCCHH
LIVQMQVLDLIERVARQQGLGVLLVTHDMGVVARLADDVAVIDQGKLVETGSVMDIFHAP
HHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCEEEECCCCEEECCCCCEECCCC
QHPVTRMLVQAHLSLYGLELAQ
CCHHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA