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The map label for this gene is yecS [H]

Identifier: 222102871

GI number: 222102871

Start: 549161

End: 550033

Strand: Direct

Name: yecS [H]

Synonym: Avi_7608

Alternate gene names: 222102871

Gene position: 549161-550033 (Clockwise)

Preceding gene: 222102870

Following gene: 222102872

Centisome position: 86.92

GC content: 57.96

Gene sequence:

>873_bases
ATGTCGCTTTTTGCTCAACCCGTCAGCATGGCTATCGCACCTCCGATCGGCAAGCCGATACGGTGGGGGCAGATTACATC
AGGCACCAGCGCGATTCTTGCGCTGGCGCTCCTCATCACCATCGTCGCGCGAAACCAGAGCGTTCAATGGGGCGAAATAC
CCCGTTACATGGTTGATCCAGTCATCCTCAGCGGCGTTGTTCTGACCTTGCAACTGACATCAGGCGCAATGGTGTTCGGT
ATCGCTTTCGGCTGCATCGTTGCTGTCATGGCAACAAGTCAGAATATCGTTTTGAAAGCCCTGGCAATTGCCTTCGTCTG
GTGGTTTCGTGGCGTGCCGCTCATCGTCCAGATCTTCTTCTGGTTCAACATCGCGTTGTTCATTCCGGAAGTGGGCATTG
GCAGCTACTCCATATCGATCAACGCGCTCGTCACTCCGGCACTTGCCGGGTTCTTGGCGCTGGGCCTGCATGAAGCCGCC
AATATGAGCGAGATCATTCGCGGCGGATTGACCGCCGTCGACCGGGGCCAACGAGAGGCAGCCTCGTCACTCGGCTTGCG
ACCACTTCAGACCCTTCGAACCGTGGTTTTGCCCCAAGCGGTCCGTCTGATCGTACCGCCTACGGGCAACCAGGCGATTG
GCATGCTGAAGGCCAGCGCCATCGTATCCGTCATCGGTATGCAGGATTTGCTGACCCAGGCGCAGGCCATCTATGCGCGC
AACTTCCTTGTCATCGAGCTCCTGTGCGTTGCGTCGCTCTGGTACCTCCTCATCACAACCCTTGCTTCGATTGGCCAGTA
TTTCCTGGAAAAGCACCTGGCCCCGAAAGGCCGGAACGCCGGTGCACAGAAAGATCAGCCGCGACGCGGCTGA

Upstream 100 bases:

>100_bases
CGGCGCCTACAAGGCGATCATGGAGAAATGGGGCCTTGGCCCGCTCGCCGTGACGACTGTCAAGTTCAATGACGCCGCCA
GCATGCCGGTGAACTGAGCC

Downstream 100 bases:

>100_bases
CGCACTGGCCGCTCGACCACCAATCAAACGGAAACGCCTTTGCAGCGCATCCGATCAGGAAACATCACGGAGTAAATCAT
GAGATTAGGAATTGACGGAC

Product: ABC transporter membrane spanning protein (amino acid)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MSLFAQPVSMAIAPPIGKPIRWGQITSGTSAILALALLITIVARNQSVQWGEIPRYMVDPVILSGVVLTLQLTSGAMVFG
IAFGCIVAVMATSQNIVLKALAIAFVWWFRGVPLIVQIFFWFNIALFIPEVGIGSYSISINALVTPALAGFLALGLHEAA
NMSEIIRGGLTAVDRGQREAASSLGLRPLQTLRTVVLPQAVRLIVPPTGNQAIGMLKASAIVSVIGMQDLLTQAQAIYAR
NFLVIELLCVASLWYLLITTLASIGQYFLEKHLAPKGRNAGAQKDQPRRG

Sequences:

>Translated_290_residues
MSLFAQPVSMAIAPPIGKPIRWGQITSGTSAILALALLITIVARNQSVQWGEIPRYMVDPVILSGVVLTLQLTSGAMVFG
IAFGCIVAVMATSQNIVLKALAIAFVWWFRGVPLIVQIFFWFNIALFIPEVGIGSYSISINALVTPALAGFLALGLHEAA
NMSEIIRGGLTAVDRGQREAASSLGLRPLQTLRTVVLPQAVRLIVPPTGNQAIGMLKASAIVSVIGMQDLLTQAQAIYAR
NFLVIELLCVASLWYLLITTLASIGQYFLEKHLAPKGRNAGAQKDQPRRG
>Mature_289_residues
SLFAQPVSMAIAPPIGKPIRWGQITSGTSAILALALLITIVARNQSVQWGEIPRYMVDPVILSGVVLTLQLTSGAMVFGI
AFGCIVAVMATSQNIVLKALAIAFVWWFRGVPLIVQIFFWFNIALFIPEVGIGSYSISINALVTPALAGFLALGLHEAAN
MSEIIRGGLTAVDRGQREAASSLGLRPLQTLRTVVLPQAVRLIVPPTGNQAIGMLKASAIVSVIGMQDLLTQAQAIYARN
FLVIELLCVASLWYLLITTLASIGQYFLEKHLAPKGRNAGAQKDQPRRG

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=220, Percent_Identity=35, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1786874, Length=224, Percent_Identity=32.5892857142857, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1786873, Length=215, Percent_Identity=32.5581395348837, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787030, Length=215, Percent_Identity=30.2325581395349, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1788646, Length=222, Percent_Identity=30.1801801801802, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI87082239, Length=195, Percent_Identity=32.3076923076923, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787087, Length=217, Percent_Identity=31.3364055299539, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788645, Length=207, Percent_Identity=28.9855072463768, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI48994930, Length=123, Percent_Identity=38.2113821138211, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787086, Length=221, Percent_Identity=25.7918552036199, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31086; Mature: 30955

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFAQPVSMAIAPPIGKPIRWGQITSGTSAILALALLITIVARNQSVQWGEIPRYMVDP
CCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
VILSGVVLTLQLTSGAMVFGIAFGCIVAVMATSQNIVLKALAIAFVWWFRGVPLIVQIFF
HHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
WFNIALFIPEVGIGSYSISINALVTPALAGFLALGLHEAANMSEIIRGGLTAVDRGQREA
HHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHCCHHHH
ASSLGLRPLQTLRTVVLPQAVRLIVPPTGNQAIGMLKASAIVSVIGMQDLLTQAQAIYAR
HHHCCCCHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NFLVIELLCVASLWYLLITTLASIGQYFLEKHLAPKGRNAGAQKDQPRRG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SLFAQPVSMAIAPPIGKPIRWGQITSGTSAILALALLITIVARNQSVQWGEIPRYMVDP
CCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
VILSGVVLTLQLTSGAMVFGIAFGCIVAVMATSQNIVLKALAIAFVWWFRGVPLIVQIFF
HHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
WFNIALFIPEVGIGSYSISINALVTPALAGFLALGLHEAANMSEIIRGGLTAVDRGQREA
HHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHCCHHHH
ASSLGLRPLQTLRTVVLPQAVRLIVPPTGNQAIGMLKASAIVSVIGMQDLLTQAQAIYAR
HHHCCCCHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NFLVIELLCVASLWYLLITTLASIGQYFLEKHLAPKGRNAGAQKDQPRRG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]