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The map label for this gene is tnp [H]

Identifier: 222102838

GI number: 222102838

Start: 512660

End: 513391

Strand: Direct

Name: tnp [H]

Synonym: Avi_7566

Alternate gene names: 222102838

Gene position: 512660-513391 (Clockwise)

Preceding gene: 222102837

Following gene: 222102844

Centisome position: 81.15

GC content: 56.83

Gene sequence:

>732_bases
ATGCATGGTTGGTCGCCCCAGCAGATCGCCGGTCGCATGCGGCTGGAACAGCATCCGATCTTTGTCAGCCACGAGACAAT
TTACAAGTTCGCATACTCGGCCGACGGTCATGCCATCAAGCTGTGGCGTCACCTGCCGGAGCATCGAGCTAAGCAACGAC
CACAACATGCAAGACGTAAGCATGGTCAAAGGTTTGGCCCGGAACTCAACATTCTGCATCGTCCGAATGTCGTTGCTGAA
CGCAAGCAGTTCGGGCATTGGGAATGCGATCTGATTCAGTTCCGGAAGAAGTACGGCAAGGCCAACGTGACATCGCTTGT
TGAGCGGGTGAGCCGCTTCACGATCTTGTTGCGCAACAATGATCGCCAGTCCCGCCCGGTCATGGATGGCATCATCCAGG
CGCTGATGAGCCTCCCTCACCTCGCCCGCCGATCGTTGACATTCGACCGAGGCACCGAATTCACTGACTGGCCGTACCTT
CAGGCAGGCATAGGCACGCAAACATGGTTTTGTGACCCACAATCGCCCTGGCAGAAAGGAACGGTCGAAAATACAAATAG
GCGAGCGCGGAAATGGCTTTCCAGGGACGTCGATCCCTTGTCCGTAGCCGCCGCCGATCTGATGGAGATCTGCAATCGGC
TCAATCAGACACCGCGTAAATGCCTCGGCTACCGAACGCCGGCTGAGGTCTTCCGCAAGAAACTGCTCGCGCAGATGCGA
CATGCCAGGTAG

Upstream 100 bases:

>100_bases
AAGGGGTGGGCTCAAGGATGAAGTGCGACTTGCAATAGATAACAAAGGTTTATCGTTTGCAAGGAAAGCGCAATGAAACG
CACCTACTCCCATCCGGATC

Downstream 100 bases:

>100_bases
CTTGAAAGCCGCGCAGGTCGCGCTTCAGCGTGAACTCACAACTGTTAAAATTGCATAAACCGAATCGGAGGCTCCATTGG
ATACCGTTACCATTGAAACA

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MHGWSPQQIAGRMRLEQHPIFVSHETIYKFAYSADGHAIKLWRHLPEHRAKQRPQHARRKHGQRFGPELNILHRPNVVAE
RKQFGHWECDLIQFRKKYGKANVTSLVERVSRFTILLRNNDRQSRPVMDGIIQALMSLPHLARRSLTFDRGTEFTDWPYL
QAGIGTQTWFCDPQSPWQKGTVENTNRRARKWLSRDVDPLSVAAADLMEICNRLNQTPRKCLGYRTPAEVFRKKLLAQMR
HAR

Sequences:

>Translated_243_residues
MHGWSPQQIAGRMRLEQHPIFVSHETIYKFAYSADGHAIKLWRHLPEHRAKQRPQHARRKHGQRFGPELNILHRPNVVAE
RKQFGHWECDLIQFRKKYGKANVTSLVERVSRFTILLRNNDRQSRPVMDGIIQALMSLPHLARRSLTFDRGTEFTDWPYL
QAGIGTQTWFCDPQSPWQKGTVENTNRRARKWLSRDVDPLSVAAADLMEICNRLNQTPRKCLGYRTPAEVFRKKLLAQMR
HAR
>Mature_243_residues
MHGWSPQQIAGRMRLEQHPIFVSHETIYKFAYSADGHAIKLWRHLPEHRAKQRPQHARRKHGQRFGPELNILHRPNVVAE
RKQFGHWECDLIQFRKKYGKANVTSLVERVSRFTILLRNNDRQSRPVMDGIIQALMSLPHLARRSLTFDRGTEFTDWPYL
QAGIGTQTWFCDPQSPWQKGTVENTNRRARKWLSRDVDPLSVAAADLMEICNRLNQTPRKCLGYRTPAEVFRKKLLAQMR
HAR

Specific function: Required for the transposition of the insertion element (Potential) [H]

COG id: COG2826

COG function: function code L; Transposase and inactivated derivatives, IS30 family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1790736, Length=248, Percent_Identity=34.2741935483871, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787671, Length=248, Percent_Identity=34.2741935483871, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1786450, Length=248, Percent_Identity=33.8709677419355, Blast_Score=132, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR001598 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 28562; Mature: 28562

Theoretical pI: Translated: 11.27; Mature: 11.27

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHGWSPQQIAGRMRLEQHPIFVSHETIYKFAYSADGHAIKLWRHLPEHRAKQRPQHARRK
CCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHH
HGQRFGPELNILHRPNVVAERKQFGHWECDLIQFRKKYGKANVTSLVERVSRFTILLRNN
HHHHCCCCCEEEECCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEECC
DRQSRPVMDGIIQALMSLPHLARRSLTFDRGTEFTDWPYLQAGIGTQTWFCDPQSPWQKG
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCEEEECCCCCCCCC
TVENTNRRARKWLSRDVDPLSVAAADLMEICNRLNQTPRKCLGYRTPAEVFRKKLLAQMR
CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHH
HAR
HCC
>Mature Secondary Structure
MHGWSPQQIAGRMRLEQHPIFVSHETIYKFAYSADGHAIKLWRHLPEHRAKQRPQHARRK
CCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHH
HGQRFGPELNILHRPNVVAERKQFGHWECDLIQFRKKYGKANVTSLVERVSRFTILLRNN
HHHHCCCCCEEEECCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEECC
DRQSRPVMDGIIQALMSLPHLARRSLTFDRGTEFTDWPYLQAGIGTQTWFCDPQSPWQKG
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCEEEECCCCCCCCC
TVENTNRRARKWLSRDVDPLSVAAADLMEICNRLNQTPRKCLGYRTPAEVFRKKLLAQMR
CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHH
HAR
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]