| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
Click here to switch to the map view.
The map label for this gene is 222102837
Identifier: 222102837
GI number: 222102837
Start: 511533
End: 512321
Strand: Direct
Name: 222102837
Synonym: Avi_7565
Alternate gene names: NA
Gene position: 511533-512321 (Clockwise)
Preceding gene: 222102834
Following gene: 222102838
Centisome position: 80.97
GC content: 56.91
Gene sequence:
>789_bases ATGCAGACCATTCGTTTTACTTTAGCAGCCTCCATATCCGTCATTGCCACGGCAACATCGGCCTTTGCGGCACCCGTTCT GGCATTGAGCGGCGACAAGACACTCGTGATTTTCGATACGGAAAAGCCTTCCGTGACAAAGACGATGGATGTTACGGGCG TCGATAAGCTCGTCGGCATCGATTATCGCTCCGGCAACAAGACGGTCATTGGCGTTACGCCGGACCACCGTATTGTCAGC ATCAACCTGGAGACGGGCGCTGCAAGCGAAGTGGCGAAGATGGACAAGATGCTGACCATGACTGACGCGCCTGTCGTGGT CGATTTCAACCCGATGGCAGACCGCCTGCGCTTCATGACCGGCACCACCAACCACCGCGTTCACCCCGATACGGGTGCCG TGACGGTTGACGGCGTGCTCGCTTTCGAAGAGGGCGATATGCATAAGGGCGAGACCCCGAACATTGTAGCCGCCGCCTAT ACCAATTCCATCGGCAAGCCGGAAAAGACTGCGATGTACAATATCGACGCCACTATCGGAGCGTTGATCCAGCAGACAAA GCCGAATGACGGCACACTGAAAGCCATCGGCAAGCTTGGCCTGAAAGACAAGCCCGCGACCTATGCCTTCGACATTCAAG GAATGGAGGGCGGCAAGAACGCGGCCTATCTGGTGGCAAGTAAGATGCTTTACACCGTCAATCTCGAAACGGGCGCAGCG ACCGAAGTCGGCGCGATCTCTGGTCTGGAAAATGAGGTGCGGGACATCGCAGTCCTGCCGGCGACCTGA
Upstream 100 bases:
>100_bases AGCGCTGCATCCAAACGCGTCGTCTGTTGTGTCTTCAAGATGGAAGGTCGTGAGCCAGACGGCGGAACCTTCTTCGATTT TGAACGCACGGGAGAAAAAC
Downstream 100 bases:
>100_bases TACTGAAGAGCAAGGCGGGCGATGAGCCTGCCTTGCTCGTCTTGTGACGCGGCGTCGGAGGGGGACCCCTGCGATCGGTT CCGTAAGGCTCTGATTAATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 262; Mature: 262
Protein sequence:
>262_residues MQTIRFTLAASISVIATATSAFAAPVLALSGDKTLVIFDTEKPSVTKTMDVTGVDKLVGIDYRSGNKTVIGVTPDHRIVS INLETGAASEVAKMDKMLTMTDAPVVVDFNPMADRLRFMTGTTNHRVHPDTGAVTVDGVLAFEEGDMHKGETPNIVAAAY TNSIGKPEKTAMYNIDATIGALIQQTKPNDGTLKAIGKLGLKDKPATYAFDIQGMEGGKNAAYLVASKMLYTVNLETGAA TEVGAISGLENEVRDIAVLPAT
Sequences:
>Translated_262_residues MQTIRFTLAASISVIATATSAFAAPVLALSGDKTLVIFDTEKPSVTKTMDVTGVDKLVGIDYRSGNKTVIGVTPDHRIVS INLETGAASEVAKMDKMLTMTDAPVVVDFNPMADRLRFMTGTTNHRVHPDTGAVTVDGVLAFEEGDMHKGETPNIVAAAY TNSIGKPEKTAMYNIDATIGALIQQTKPNDGTLKAIGKLGLKDKPATYAFDIQGMEGGKNAAYLVASKMLYTVNLETGAA TEVGAISGLENEVRDIAVLPAT >Mature_262_residues MQTIRFTLAASISVIATATSAFAAPVLALSGDKTLVIFDTEKPSVTKTMDVTGVDKLVGIDYRSGNKTVIGVTPDHRIVS INLETGAASEVAKMDKMLTMTDAPVVVDFNPMADRLRFMTGTTNHRVHPDTGAVTVDGVLAFEEGDMHKGETPNIVAAAY TNSIGKPEKTAMYNIDATIGALIQQTKPNDGTLKAIGKLGLKDKPATYAFDIQGMEGGKNAAYLVASKMLYTVNLETGAA TEVGAISGLENEVRDIAVLPAT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27609; Mature: 27609
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQTIRFTLAASISVIATATSAFAAPVLALSGDKTLVIFDTEKPSVTKTMDVTGVDKLVGI CCEEEEEEEEEEEEEEEHHHHHHCEEEEECCCCEEEEEECCCCCCEEEEECCCCCCEEEE DYRSGNKTVIGVTPDHRIVSINLETGAASEVAKMDKMLTMTDAPVVVDFNPMADRLRFMT EEECCCEEEEEECCCCEEEEEEECCCCHHHHHHHHHEEEECCCCEEEECCCHHHHEEEEE GTTNHRVHPDTGAVTVDGVLAFEEGDMHKGETPNIVAAAYTNSIGKPEKTAMYNIDATIG CCCCCEECCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCEEEEECCHHHH ALIQQTKPNDGTLKAIGKLGLKDKPATYAFDIQGMEGGKNAAYLVASKMLYTVNLETGAA HHHHHCCCCCCHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEEEEEEEEEEEEEECCCCC TEVGAISGLENEVRDIAVLPAT CCCHHHCCCCCCCCEEEEECCC >Mature Secondary Structure MQTIRFTLAASISVIATATSAFAAPVLALSGDKTLVIFDTEKPSVTKTMDVTGVDKLVGI CCEEEEEEEEEEEEEEEHHHHHHCEEEEECCCCEEEEEECCCCCCEEEEECCCCCCEEEE DYRSGNKTVIGVTPDHRIVSINLETGAASEVAKMDKMLTMTDAPVVVDFNPMADRLRFMT EEECCCEEEEEECCCCEEEEEEECCCCHHHHHHHHHEEEECCCCEEEECCCHHHHEEEEE GTTNHRVHPDTGAVTVDGVLAFEEGDMHKGETPNIVAAAYTNSIGKPEKTAMYNIDATIG CCCCCEECCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCEEEEECCHHHH ALIQQTKPNDGTLKAIGKLGLKDKPATYAFDIQGMEGGKNAAYLVASKMLYTVNLETGAA HHHHHCCCCCCHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEEEEEEEEEEEEEECCCCC TEVGAISGLENEVRDIAVLPAT CCCHHHCCCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA