| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is dppD [C]
Identifier: 222102813
GI number: 222102813
Start: 478980
End: 479993
Strand: Direct
Name: dppD [C]
Synonym: Avi_7533
Alternate gene names: 222102813
Gene position: 478980-479993 (Clockwise)
Preceding gene: 222102812
Following gene: 222102814
Centisome position: 75.81
GC content: 56.51
Gene sequence:
>1014_bases ATGGCCAGTGACATCAGCCAACCTCCTATCCTGTCGTGCGAGCGCATGTCCTGCACAATTGCGGCAAAACCTGCCCCTTT GCAGGTGCTGCACGATATTAATTTCTCTGTCCCACGGCGCACAACACTGGGCATTGTTGGTGAGTCCGGTGCCGGAAAAT CCATGCTGATCAAGTCAATCATGGGCATTTCCCCAACACCGGTGCGGGTTGAAGGGCGCATCGTTCTGGATGGAATTGAT CTCTCGACCTTGAAGCCCAAAGCCCGCAGCCAGATGATTGGCCGCAAGGTTGGCATCGTCTTTCAAAATCCGATGACTTC GCTCAATCCCTACGCCACCATTGGCCGGCAGATTGAAGAAGCAGGGCGGTTCCATCTTGGCCTCAGCCGAACGCAAGCAC AGGAACGGGCAATAGAGCTTCTGACGGTGGTCGGCATTGCCGACGCCAAGGATTGCTATGGATATTTCCCGCACCAGTTC TCCGGCGGCATGAAACAGCGCATCATGATTGCCACAGCCTTGATGTGTCATCCCGATCTGCTGATTGCCGATGAAGCCAC CACCGCCCTCGATGTGACCGTGCAAAAGGAGGTTCTCGACCTTTTGCAAATCCTTCAGGAAGAGCGGCAGATGTCGATGA TATTGGTCTCGCACAATCTGGGCGTTGTGGCCGGGCGCACCGATAACATTCTGGTGCTCTACGGTGGCCATATCGTGGAA ACAGGGCCGACAGCCGAGGTGTTTCGCAATCCGCGCCATCCCTATACCGGGGCCCTGCTTTCGGCCATGCCAAGGATGGA CCAGCCAGCCCATGCGCGGCTGCATACCATTCCCGGCCAGCCGCCCAGCCTTGCTAACCAGCCAAAAGGCTGTCCGTTTG CACCGCGTTGTCCGTCGGCGCAGGCACTTTGCCATGAGATCATGCCGCCAATGACCATGGATGGTGATCATCATTTTGCC TGTCATTTTCCGCTGAACGACACTTCTGCCTTGCGGGAGGTTTCCCATGGTTGA
Upstream 100 bases:
>100_bases CTTGGGCCGGTAATGGCCATTATTCTAACGGTCTATGCGTTCAACACCGTGGGGGATTATTTCGCCCAGCGTCTCAACAG CCGCGAGAGGGAGAGCTGAT
Downstream 100 bases:
>100_bases CCCGTTGTTGAACGTCTCCGGCCTGTCCGTCGATTTTTCGCGTGGGGCTAAGATGATGAGGGCCGTTGATAACGTGTCTT TCTCTTTGGCTCCGGGGGAA
Product: ABC transporter nucleotide binding/ATPase protein (oligopeptide)
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 337; Mature: 336
Protein sequence:
>337_residues MASDISQPPILSCERMSCTIAAKPAPLQVLHDINFSVPRRTTLGIVGESGAGKSMLIKSIMGISPTPVRVEGRIVLDGID LSTLKPKARSQMIGRKVGIVFQNPMTSLNPYATIGRQIEEAGRFHLGLSRTQAQERAIELLTVVGIADAKDCYGYFPHQF SGGMKQRIMIATALMCHPDLLIADEATTALDVTVQKEVLDLLQILQEERQMSMILVSHNLGVVAGRTDNILVLYGGHIVE TGPTAEVFRNPRHPYTGALLSAMPRMDQPAHARLHTIPGQPPSLANQPKGCPFAPRCPSAQALCHEIMPPMTMDGDHHFA CHFPLNDTSALREVSHG
Sequences:
>Translated_337_residues MASDISQPPILSCERMSCTIAAKPAPLQVLHDINFSVPRRTTLGIVGESGAGKSMLIKSIMGISPTPVRVEGRIVLDGID LSTLKPKARSQMIGRKVGIVFQNPMTSLNPYATIGRQIEEAGRFHLGLSRTQAQERAIELLTVVGIADAKDCYGYFPHQF SGGMKQRIMIATALMCHPDLLIADEATTALDVTVQKEVLDLLQILQEERQMSMILVSHNLGVVAGRTDNILVLYGGHIVE TGPTAEVFRNPRHPYTGALLSAMPRMDQPAHARLHTIPGQPPSLANQPKGCPFAPRCPSAQALCHEIMPPMTMDGDHHFA CHFPLNDTSALREVSHG >Mature_336_residues ASDISQPPILSCERMSCTIAAKPAPLQVLHDINFSVPRRTTLGIVGESGAGKSMLIKSIMGISPTPVRVEGRIVLDGIDL STLKPKARSQMIGRKVGIVFQNPMTSLNPYATIGRQIEEAGRFHLGLSRTQAQERAIELLTVVGIADAKDCYGYFPHQFS GGMKQRIMIATALMCHPDLLIADEATTALDVTVQKEVLDLLQILQEERQMSMILVSHNLGVVAGRTDNILVLYGGHIVET GPTAEVFRNPRHPYTGALLSAMPRMDQPAHARLHTIPGQPPSLANQPKGCPFAPRCPSAQALCHEIMPPMTMDGDHHFAC HFPLNDTSALREVSHG
Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for energy coupling to the transport system [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI156105685, Length=235, Percent_Identity=30.6382978723404, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI42741659, Length=229, Percent_Identity=29.2576419213974, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI9961250, Length=226, Percent_Identity=30.9734513274336, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI4505771, Length=226, Percent_Identity=30.9734513274336, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI9961252, Length=226, Percent_Identity=30.9734513274336, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI171184400, Length=238, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI42490749, Length=289, Percent_Identity=25.9515570934256, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI255708477, Length=270, Percent_Identity=25.9259259259259, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI9955963, Length=224, Percent_Identity=31.6964285714286, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI9665248, Length=227, Percent_Identity=29.0748898678414, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI116734710, Length=212, Percent_Identity=24.5283018867925, Blast_Score=66, Evalue=5e-11, Organism=Homo sapiens, GI21536378, Length=225, Percent_Identity=30.2222222222222, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1789963, Length=321, Percent_Identity=42.9906542056075, Blast_Score=271, Evalue=5e-74, Organism=Escherichia coli, GI48994883, Length=318, Percent_Identity=40.5660377358491, Blast_Score=259, Evalue=3e-70, Organism=Escherichia coli, GI1787759, Length=320, Percent_Identity=39.375, Blast_Score=222, Evalue=3e-59, Organism=Escherichia coli, GI1787548, Length=328, Percent_Identity=36.890243902439, Blast_Score=219, Evalue=2e-58, Organism=Escherichia coli, GI1789962, Length=296, Percent_Identity=39.8648648648649, Blast_Score=209, Evalue=2e-55, Organism=Escherichia coli, GI145693107, Length=264, Percent_Identity=40.9090909090909, Blast_Score=205, Evalue=4e-54, Organism=Escherichia coli, GI1787500, Length=301, Percent_Identity=38.2059800664452, Blast_Score=201, Evalue=8e-53, Organism=Escherichia coli, GI1788506, Length=260, Percent_Identity=38.4615384615385, Blast_Score=177, Evalue=8e-46, Organism=Escherichia coli, GI1787758, Length=276, Percent_Identity=38.0434782608696, Blast_Score=168, Evalue=4e-43, Organism=Escherichia coli, GI1789890, Length=243, Percent_Identity=35.3909465020576, Blast_Score=144, Evalue=1e-35, Organism=Escherichia coli, GI48994997, Length=260, Percent_Identity=35, Blast_Score=135, Evalue=5e-33, Organism=Escherichia coli, GI1787547, Length=231, Percent_Identity=34.1991341991342, Blast_Score=132, Evalue=3e-32, Organism=Escherichia coli, GI1786398, Length=250, Percent_Identity=32, Blast_Score=130, Evalue=2e-31, Organism=Escherichia coli, GI1787029, Length=227, Percent_Identity=32.15859030837, Blast_Score=112, Evalue=4e-26, Organism=Escherichia coli, GI1789891, Length=219, Percent_Identity=32.4200913242009, Blast_Score=110, Evalue=9e-26, Organism=Escherichia coli, GI1788225, Length=239, Percent_Identity=32.2175732217573, Blast_Score=109, Evalue=3e-25, Organism=Escherichia coli, GI1789032, Length=228, Percent_Identity=29.3859649122807, Blast_Score=107, Evalue=8e-25, Organism=Escherichia coli, GI1789672, Length=235, Percent_Identity=32.7659574468085, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1787089, Length=230, Percent_Identity=32.6086956521739, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1786872, Length=240, Percent_Identity=33.75, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI1788761, Length=248, Percent_Identity=30.241935483871, Blast_Score=101, Evalue=8e-23, Organism=Escherichia coli, GI87081709, Length=232, Percent_Identity=26.7241379310345, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1786703, Length=233, Percent_Identity=30.9012875536481, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1788644, Length=193, Percent_Identity=33.160621761658, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1787370, Length=247, Percent_Identity=25.5060728744939, Blast_Score=93, Evalue=3e-20, Organism=Escherichia coli, GI1790162, Length=235, Percent_Identity=28.5106382978723, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1787105, Length=238, Percent_Identity=31.9327731092437, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1786345, Length=227, Percent_Identity=31.7180616740088, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI87081834, Length=219, Percent_Identity=28.7671232876712, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI87081791, Length=236, Percent_Identity=26.6949152542373, Blast_Score=88, Evalue=8e-19, Organism=Escherichia coli, GI48995001, Length=226, Percent_Identity=33.1858407079646, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1786654, Length=225, Percent_Identity=32, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI48994943, Length=254, Percent_Identity=27.9527559055118, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786563, Length=214, Percent_Identity=31.3084112149533, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1786981, Length=216, Percent_Identity=32.8703703703704, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786319, Length=219, Percent_Identity=29.6803652968037, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1787143, Length=220, Percent_Identity=30.9090909090909, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1787712, Length=254, Percent_Identity=26.7716535433071, Blast_Score=75, Evalue=8e-15, Organism=Escherichia coli, GI1789873, Length=215, Percent_Identity=29.7674418604651, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1790190, Length=234, Percent_Identity=28.2051282051282, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1786253, Length=216, Percent_Identity=28.7037037037037, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1787164, Length=211, Percent_Identity=30.8056872037915, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1789991, Length=214, Percent_Identity=27.1028037383178, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1790544, Length=277, Percent_Identity=24.5487364620939, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1786803, Length=223, Percent_Identity=26.9058295964126, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI87082268, Length=251, Percent_Identity=26.2948207171315, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1788165, Length=224, Percent_Identity=27.2321428571429, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1790467, Length=247, Percent_Identity=24.6963562753036, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI87082267, Length=251, Percent_Identity=21.9123505976096, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788450, Length=233, Percent_Identity=24.0343347639485, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI87081782, Length=213, Percent_Identity=27.2300469483568, Blast_Score=62, Evalue=6e-11, Organism=Escherichia coli, GI1789586, Length=226, Percent_Identity=25.6637168141593, Blast_Score=62, Evalue=6e-11, Organism=Escherichia coli, GI1790739, Length=237, Percent_Identity=23.2067510548523, Blast_Score=61, Evalue=1e-10, Organism=Caenorhabditis elegans, GI212646699, Length=225, Percent_Identity=32.8888888888889, Blast_Score=85, Evalue=6e-17, Organism=Caenorhabditis elegans, GI193208177, Length=228, Percent_Identity=31.140350877193, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17541710, Length=228, Percent_Identity=33.7719298245614, Blast_Score=81, Evalue=8e-16, Organism=Caenorhabditis elegans, GI193211015, Length=234, Percent_Identity=30.7692307692308, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI193202349, Length=234, Percent_Identity=30.3418803418803, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI71996809, Length=234, Percent_Identity=30.7692307692308, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI193211017, Length=234, Percent_Identity=30.7692307692308, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI115534520, Length=261, Percent_Identity=27.9693486590038, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI25146777, Length=233, Percent_Identity=28.3261802575107, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193209708, Length=219, Percent_Identity=32.8767123287671, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17543740, Length=234, Percent_Identity=31.6239316239316, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17558664, Length=230, Percent_Identity=30.8695652173913, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71992290, Length=272, Percent_Identity=28.3088235294118, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17569143, Length=250, Percent_Identity=29.2, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17567265, Length=234, Percent_Identity=27.7777777777778, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17552010, Length=222, Percent_Identity=24.3243243243243, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=260, Percent_Identity=28.4615384615385, Blast_Score=91, Evalue=2e-19, Organism=Saccharomyces cerevisiae, GI6323959, Length=240, Percent_Identity=27.0833333333333, Blast_Score=66, Evalue=7e-12, Organism=Drosophila melanogaster, GI85726357, Length=238, Percent_Identity=29.4117647058824, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI24641565, Length=231, Percent_Identity=32.4675324675325, Blast_Score=78, Evalue=9e-15, Organism=Drosophila melanogaster, GI21357907, Length=268, Percent_Identity=27.6119402985075, Blast_Score=76, Evalue=4e-14, Organism=Drosophila melanogaster, GI17136662, Length=213, Percent_Identity=30.9859154929577, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI23397593, Length=227, Percent_Identity=29.9559471365639, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24659289, Length=239, Percent_Identity=28.4518828451883, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI281363262, Length=242, Percent_Identity=32.6446280991736, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI28574150, Length=218, Percent_Identity=24.3119266055046, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI24653245, Length=242, Percent_Identity=32.6446280991736, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI116007328, Length=218, Percent_Identity=24.3119266055046, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI28574533, Length=224, Percent_Identity=26.7857142857143, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI19920532, Length=256, Percent_Identity=25.390625, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24580930, Length=256, Percent_Identity=25.390625, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI28574744, Length=229, Percent_Identity=24.0174672489083, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36613; Mature: 36482
Theoretical pI: Translated: 7.61; Mature: 7.61
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 7.1 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 6.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASDISQPPILSCERMSCTIAAKPAPLQVLHDINFSVPRRTTLGIVGESGAGKSMLIKSI CCCCCCCCCCCCCCCCEEEEECCCCCEEHEECCCCCCCCCEEEEEEECCCCCHHHHHHHH MGISPTPVRVEGRIVLDGIDLSTLKPKARSQMIGRKVGIVFQNPMTSLNPYATIGRQIEE HCCCCCCEEEECEEEEECCCCCCCCCHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHH AGRFHLGLSRTQAQERAIELLTVVGIADAKDCYGYFPHQFSGGMKQRIMIATALMCHPDL CCCEEECCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHCCCHHHHHHHHHHHHHCCCE LIADEATTALDVTVQKEVLDLLQILQEERQMSMILVSHNLGVVAGRTDNILVLYGGHIVE EEECCCCCEEEEEEHHHHHHHHHHHHHHHHHEEEEEECCCEEEECCCCCEEEEECCEEEE TGPTAEVFRNPRHPYTGALLSAMPRMDQPAHARLHTIPGQPPSLANQPKGCPFAPRCPSA CCCCHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCH QALCHEIMPPMTMDGDHHFACHFPLNDTSALREVSHG HHHHHHHCCCCEECCCCEEEEEECCCCHHHHHHHCCC >Mature Secondary Structure ASDISQPPILSCERMSCTIAAKPAPLQVLHDINFSVPRRTTLGIVGESGAGKSMLIKSI CCCCCCCCCCCCCCCEEEEECCCCCEEHEECCCCCCCCCEEEEEEECCCCCHHHHHHHH MGISPTPVRVEGRIVLDGIDLSTLKPKARSQMIGRKVGIVFQNPMTSLNPYATIGRQIEE HCCCCCCEEEECEEEEECCCCCCCCCHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHH AGRFHLGLSRTQAQERAIELLTVVGIADAKDCYGYFPHQFSGGMKQRIMIATALMCHPDL CCCEEECCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHCCCHHHHHHHHHHHHHCCCE LIADEATTALDVTVQKEVLDLLQILQEERQMSMILVSHNLGVVAGRTDNILVLYGGHIVE EEECCCCCEEEEEEHHHHHHHHHHHHHHHHHEEEEEECCCEEEECCCCCEEEEECCEEEE TGPTAEVFRNPRHPYTGALLSAMPRMDQPAHARLHTIPGQPPSLANQPKGCPFAPRCPSA CCCCHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCH QALCHEIMPPMTMDGDHHFACHFPLNDTSALREVSHG HHHHHHHCCCCEECCCCEEEEEECCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA