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The map label for this gene is ybaO [C]

Identifier: 222102797

GI number: 222102797

Start: 460437

End: 460913

Strand: Direct

Name: ybaO [C]

Synonym: Avi_7513

Alternate gene names: 222102797

Gene position: 460437-460913 (Clockwise)

Preceding gene: 222102785

Following gene: 222102798

Centisome position: 72.88

GC content: 53.46

Gene sequence:

>477_bases
ATGCAGCTTGATCGCCTCGACGCCCGCCTCCTGAATATTTTGCAAACGCACAATCGCCACAGCACCGAAGAACTGGGGGC
GTTGGTTGGCCTGTCTGCAACCGCAGTGCAGCGACGGCTCAAACGCCTGCGCGAAAATGGGGTGATCGAGGCCGATGTCT
CGATTATCCGGCCCAAAGATGTTGGTCGGCCAATCGCCATGCTGGTGCTGGTGTCTCTAGAGCGCGAAAGGGCCGATATT
GTTGACCGGTTCAAGCAATCCATTCGCCAGACACCCGAAGTGATGAACGGCTACTACGTCACCGGCGACTCTGACTTCGT
GCTCATTGTTACGGCACAAAGCATGGAAGATTACGAAGGCTTTACGCGGAAATTCTTTTATGAAAACCCTGATATCAAGG
GCTTCAAAACGATGGTCGTTATGGATCGGGTTAAGGTCGGCTTCTCGGTGCCTATCGACTTTGACGACTTTTCCTGA

Upstream 100 bases:

>100_bases
TATGTGCATCGCAGCGCAGATTTTCGATATGATTTGTTGCTATTGCGAAGAAATCCTGCATTATTTTCAATAATGACGAA
GAAATCATGCGGGAATCTCA

Downstream 100 bases:

>100_bases
CGGCACAATAGACTTAGGGATGACGGATTTTACAGTCATAACGAGAAAATAAAATTTATACTCTAATTTAATAAAGAAAT
TGGCTCTTCACAATTTGACC

Product: transcriptional regulator AsnC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MQLDRLDARLLNILQTHNRHSTEELGALVGLSATAVQRRLKRLRENGVIEADVSIIRPKDVGRPIAMLVLVSLERERADI
VDRFKQSIRQTPEVMNGYYVTGDSDFVLIVTAQSMEDYEGFTRKFFYENPDIKGFKTMVVMDRVKVGFSVPIDFDDFS

Sequences:

>Translated_158_residues
MQLDRLDARLLNILQTHNRHSTEELGALVGLSATAVQRRLKRLRENGVIEADVSIIRPKDVGRPIAMLVLVSLERERADI
VDRFKQSIRQTPEVMNGYYVTGDSDFVLIVTAQSMEDYEGFTRKFFYENPDIKGFKTMVVMDRVKVGFSVPIDFDDFS
>Mature_158_residues
MQLDRLDARLLNILQTHNRHSTEELGALVGLSATAVQRRLKRLRENGVIEADVSIIRPKDVGRPIAMLVLVSLERERADI
VDRFKQSIRQTPEVMNGYYVTGDSDFVLIVTAQSMEDYEGFTRKFFYENPDIKGFKTMVVMDRVKVGFSVPIDFDDFS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=26.4900662251656, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1787116, Length=143, Percent_Identity=30.0699300699301, Blast_Score=76, Evalue=1e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 18100; Mature: 18100

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2 ; PS00308 LECTIN_LEGUME_ALPHA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLDRLDARLLNILQTHNRHSTEELGALVGLSATAVQRRLKRLRENGVIEADVSIIRPKD
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCEEECCEEECCCC
VGRPIAMLVLVSLERERADIVDRFKQSIRQTPEVMNGYYVTGDSDFVLIVTAQSMEDYEG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCEEEECCCCEEEEEEECCCHHHHH
FTRKFFYENPDIKGFKTMVVMDRVKVGFSVPIDFDDFS
HHHHHHCCCCCCCCHHHHHHHHHHHCCEECCCCCCCCC
>Mature Secondary Structure
MQLDRLDARLLNILQTHNRHSTEELGALVGLSATAVQRRLKRLRENGVIEADVSIIRPKD
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCEEECCEEECCCC
VGRPIAMLVLVSLERERADIVDRFKQSIRQTPEVMNGYYVTGDSDFVLIVTAQSMEDYEG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCEEEECCCCEEEEEEECCCHHHHH
FTRKFFYENPDIKGFKTMVVMDRVKVGFSVPIDFDDFS
HHHHHHCCCCCCCCHHHHHHHHHHHCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]