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The map label for this gene is lrpC [H]

Identifier: 222102767

GI number: 222102767

Start: 424795

End: 425244

Strand: Reverse

Name: lrpC [H]

Synonym: Avi_7459

Alternate gene names: 222102767

Gene position: 425244-424795 (Counterclockwise)

Preceding gene: 222102768

Following gene: 222102766

Centisome position: 67.31

GC content: 56.89

Gene sequence:

>450_bases
ATGGATATCATAGACCGCAAAATAGTCAGTCTTCTTGCCGAAGACGCCCGCCGCTCGCTTGCCGATATTGGCAATATCGT
CGAGCTTTCCGCGTCGGCGGTGAACGAGCGCATCAGACGCCTGACCGCGAGTGGGGCGATCCGCCGTGTCACCGTTGATG
CCGATCCATCCGCATTCGATTTGCCGGTGATCGCCTTCGTGTGGATCGCCTTGGCGGCGGATGCGGACGAGGCCAGCTTT
CGTACCTATGCTGCGTCCCAGTCCGCTATTGCGGAATGTCACCATGTGACGGGGCAATGGTCCTATCTCATGAAGGTTCA
TGTCGCGTCGCTGGCGGAAATCGAAGCCTTTCTGGCGGGAATGAAACAGAACAGATTCCTTGCACGTAGCGAGACAATCA
TTGCTCTCTCATCCGTGGTGCCAGGACCATTCATGCCGAAGGGAAGTTAG

Upstream 100 bases:

>100_bases
GCCGTCCCCTGTGTTCGCCAGATTCCCTAAATTATAAGGCGACGACAATGCCACCACATAATATCTTGTATTTTGTAATT
TTACGTGGCTTTATACGGAT

Downstream 100 bases:

>100_bases
GACTGATGGAGCTGACACTCATTTTGAAAAGCATTGTGCTTGGCCTTGCTGTCGCAGCCCCGCTCGGCCCCATCGGCGCC
TTGTGCATCAACCGGACTCT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MDIIDRKIVSLLAEDARRSLADIGNIVELSASAVNERIRRLTASGAIRRVTVDADPSAFDLPVIAFVWIALAADADEASF
RTYAASQSAIAECHHVTGQWSYLMKVHVASLAEIEAFLAGMKQNRFLARSETIIALSSVVPGPFMPKGS

Sequences:

>Translated_149_residues
MDIIDRKIVSLLAEDARRSLADIGNIVELSASAVNERIRRLTASGAIRRVTVDADPSAFDLPVIAFVWIALAADADEASF
RTYAASQSAIAECHHVTGQWSYLMKVHVASLAEIEAFLAGMKQNRFLARSETIIALSSVVPGPFMPKGS
>Mature_149_residues
MDIIDRKIVSLLAEDARRSLADIGNIVELSASAVNERIRRLTASGAIRRVTVDADPSAFDLPVIAFVWIALAADADEASF
RTYAASQSAIAECHHVTGQWSYLMKVHVASLAEIEAFLAGMKQNRFLARSETIIALSSVVPGPFMPKGS

Specific function: Transcriptional regulator with a possible role in regulation of amino acid metabolism. Plays a role in the growth phase transition [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787116, Length=121, Percent_Identity=33.0578512396694, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR000835
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16101; Mature: 16101

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIIDRKIVSLLAEDARRSLADIGNIVELSASAVNERIRRLTASGAIRRVTVDADPSAFD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
LPVIAFVWIALAADADEASFRTYAASQSAIAECHHVTGQWSYLMKVHVASLAEIEAFLAG
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
MKQNRFLARSETIIALSSVVPGPFMPKGS
HHCCCEEHHCCHHEEHHHCCCCCCCCCCC
>Mature Secondary Structure
MDIIDRKIVSLLAEDARRSLADIGNIVELSASAVNERIRRLTASGAIRRVTVDADPSAFD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
LPVIAFVWIALAADADEASFRTYAASQSAIAECHHVTGQWSYLMKVHVASLAEIEAFLAG
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
MKQNRFLARSETIIALSSVVPGPFMPKGS
HHCCCEEHHCCHHEEHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9341680 [H]