| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102655
Identifier: 222102655
GI number: 222102655
Start: 293638
End: 294453
Strand: Reverse
Name: 222102655
Synonym: Avi_7315
Alternate gene names: NA
Gene position: 294453-293638 (Counterclockwise)
Preceding gene: 222102656
Following gene: 222102648
Centisome position: 46.61
GC content: 53.92
Gene sequence:
>816_bases ATGTCTCTTGGATGTTACGATATCGAAATGCGCACGCGGAACGCCGCCGTTCTCGTCGTGCTGTTCTCCCATTCGACCAA GCATCATTTCAAGTCTGTCGATTTTCCGGCGGACGTCCTGAGCATCGCGGATAAGGAAGACACCTATTTCACCAACACGC CAGATATTCTGGCGAATTTCATAAAAGATGTCAGTGCACCATACGATCTGGTGATTACGATTGGTGGAAGCAAAGGAGGG CATGGGGCGCTGTATCACGGCACGCTTCTCGCTCGCATGATCGAAAAACCTGTTCGTGTTCTTGCCTTCAGCCCGGTTGT CATGCTCTCGGATAACCCGAATGACGTGCTATATGTGTCCTACCAAAAGCTGATGGAGCGCGCGCAGACGACACCAGAAC TGGCGGAAAACCTGCGCCAGTCAACCCAGGTGATAACAGCAGACCCGCCGCCCAATCTCACGGCCTTCTGCATCGTCGGG GCCGACAATCACTGCGACTGTGTCGAGGCCAGCCGATTGATCGGCGCGCATATCTTGACGCTGCCCATGCATCACCATGA AACTGTCATCCCATTCCTTTGCGATACCAGCGATGCCAGAGCAGTGACGAAAACCGTGCTGGTGCTGTACGATAGAGCCG CAGAGGAGGCCGATGTTGCCCATCTGCTTGAAAAAGGCAGTGTTGACAAAATGATCGCGGACCTTTCCCGCGTTCCAAAA CAGCCTCGCCTCGATGAACTGACGAATCTTGTCATAAAGGGTGATGCCAGCATTGTAAGGCAGGCTGTGACAACGGCAGG CGCTCTTCAAGCCTGA
Upstream 100 bases:
>100_bases TGACTGACGTCTACTCTTGCGAAGATCTGAGCGGCTTTATACGAACATCGGCAGAAGATTGCATTTGATCGCCTGCTGCA CACAATGAAAGCCGCCAGAA
Downstream 100 bases:
>100_bases TCGAATCGACCTAAAGCCTGCGCTTGCATTCATCATTGCCGCCACAAGCATCTCATAACGACCGAAGCCTTGCCTTGAAC GACAAAGCTCAAACGCTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 271; Mature: 270
Protein sequence:
>271_residues MSLGCYDIEMRTRNAAVLVVLFSHSTKHHFKSVDFPADVLSIADKEDTYFTNTPDILANFIKDVSAPYDLVITIGGSKGG HGALYHGTLLARMIEKPVRVLAFSPVVMLSDNPNDVLYVSYQKLMERAQTTPELAENLRQSTQVITADPPPNLTAFCIVG ADNHCDCVEASRLIGAHILTLPMHHHETVIPFLCDTSDARAVTKTVLVLYDRAAEEADVAHLLEKGSVDKMIADLSRVPK QPRLDELTNLVIKGDASIVRQAVTTAGALQA
Sequences:
>Translated_271_residues MSLGCYDIEMRTRNAAVLVVLFSHSTKHHFKSVDFPADVLSIADKEDTYFTNTPDILANFIKDVSAPYDLVITIGGSKGG HGALYHGTLLARMIEKPVRVLAFSPVVMLSDNPNDVLYVSYQKLMERAQTTPELAENLRQSTQVITADPPPNLTAFCIVG ADNHCDCVEASRLIGAHILTLPMHHHETVIPFLCDTSDARAVTKTVLVLYDRAAEEADVAHLLEKGSVDKMIADLSRVPK QPRLDELTNLVIKGDASIVRQAVTTAGALQA >Mature_270_residues SLGCYDIEMRTRNAAVLVVLFSHSTKHHFKSVDFPADVLSIADKEDTYFTNTPDILANFIKDVSAPYDLVITIGGSKGGH GALYHGTLLARMIEKPVRVLAFSPVVMLSDNPNDVLYVSYQKLMERAQTTPELAENLRQSTQVITADPPPNLTAFCIVGA DNHCDCVEASRLIGAHILTLPMHHHETVIPFLCDTSDARAVTKTVLVLYDRAAEEADVAHLLEKGSVDKMIADLSRVPKQ PRLDELTNLVIKGDASIVRQAVTTAGALQA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29589; Mature: 29458
Theoretical pI: Translated: 5.93; Mature: 5.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLGCYDIEMRTRNAAVLVVLFSHSTKHHFKSVDFPADVLSIADKEDTYFTNTPDILANF CCCCEEEEEEECCCCEEEEEEECCCCHHHHCCCCCCHHHHHHCCCCCCEECCCHHHHHHH IKDVSAPYDLVITIGGSKGGHGALYHGTLLARMIEKPVRVLAFSPVVMLSDNPNDVLYVS HHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEECCEEEEECCCCCEEEEE YQKLMERAQTTPELAENLRQSTQVITADPPPNLTAFCIVGADNHCDCVEASRLIGAHILT HHHHHHHHCCCHHHHHHHHHHCEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHEE LPMHHHETVIPFLCDTSDARAVTKTVLVLYDRAAEEADVAHLLEKGSVDKMIADLSRVPK EECCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCC QPRLDELTNLVIKGDASIVRQAVTTAGALQA CCCHHHHHHEEEECCHHHHHHHHHHHCCCCC >Mature Secondary Structure SLGCYDIEMRTRNAAVLVVLFSHSTKHHFKSVDFPADVLSIADKEDTYFTNTPDILANF CCCEEEEEEECCCCEEEEEEECCCCHHHHCCCCCCHHHHHHCCCCCCEECCCHHHHHHH IKDVSAPYDLVITIGGSKGGHGALYHGTLLARMIEKPVRVLAFSPVVMLSDNPNDVLYVS HHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEECCEEEEECCCCCEEEEE YQKLMERAQTTPELAENLRQSTQVITADPPPNLTAFCIVGADNHCDCVEASRLIGAHILT HHHHHHHHCCCHHHHHHHHHHCEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHEE LPMHHHETVIPFLCDTSDARAVTKTVLVLYDRAAEEADVAHLLEKGSVDKMIADLSRVPK EECCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCC QPRLDELTNLVIKGDASIVRQAVTTAGALQA CCCHHHHHHEEEECCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA