| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102541
Identifier: 222102541
GI number: 222102541
Start: 137282
End: 137860
Strand: Reverse
Name: 222102541
Synonym: Avi_7170
Alternate gene names: NA
Gene position: 137860-137282 (Counterclockwise)
Preceding gene: 222102542
Following gene: 222102540
Centisome position: 21.82
GC content: 59.07
Gene sequence:
>579_bases ATGACCGATATTATTGACACTCTCAGCGGCATTGCTCCCGGCTCCAAGGGCGAGGCTTTACGCGCCCGCCGCCCGGTGAC GAAAGACGGGGCGCAAGCCAGCTGGCAAGCGCTATTTGCACCCGGCGATGATAGCCAGTTTTCAATCGAAGAGCGCTTTG CCGTTGCTGTTTTTGTGGCGGCCCTGCACGGGCAGCCGGAGATTGCGGCCTTCTACGCGGAAAAGCTTGCGACGAACCCT GCGCTTCTGAGCGCCATTCAGACCGCTGCATCCAAGGGAACGGCCATTGGGCCTTATGGCCATTATCCCGCCGGGCCGCT GTCCTCCGAAAACACCGAAGGGCCTGCCTTTACCGTGGCTGACAGCGAAAAAGCCATCCTCGGTGCGCGCTTGAGTGCTG CGCTGGAACACGCCCATCTTCTGATTTTTCACCTGCGCGATTCCAAGTCACAGGCGCTTGATGCCCTTCTCAAAGCAGGC TGGAGCACCACCGGCATTGTCACGCTGTCGCAGCTGATTTCTTTCCTCGCCTTTCAGATCCGCGTTGTTGCCGGTCTGAA AGTCCTGAACGCCACATAA
Upstream 100 bases:
>100_bases CCACTGAAGTTGCCCCCAAACTGGGCTGGAGCCGCAAGACTTCCAAAGCGCTGGCCGCCGCAGAATAATCCATTGAATTT AATCAGGAAAGTAAAGTCTG
Downstream 100 bases:
>100_bases GGACGATCCATCATGACCGACACCATTATCGACCCCAAGGTGGAAAACGCCCCCAATGTCTTCACGCAAGACCAGATCGG CTGGACACCATGGCTTGAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 192; Mature: 191
Protein sequence:
>192_residues MTDIIDTLSGIAPGSKGEALRARRPVTKDGAQASWQALFAPGDDSQFSIEERFAVAVFVAALHGQPEIAAFYAEKLATNP ALLSAIQTAASKGTAIGPYGHYPAGPLSSENTEGPAFTVADSEKAILGARLSAALEHAHLLIFHLRDSKSQALDALLKAG WSTTGIVTLSQLISFLAFQIRVVAGLKVLNAT
Sequences:
>Translated_192_residues MTDIIDTLSGIAPGSKGEALRARRPVTKDGAQASWQALFAPGDDSQFSIEERFAVAVFVAALHGQPEIAAFYAEKLATNP ALLSAIQTAASKGTAIGPYGHYPAGPLSSENTEGPAFTVADSEKAILGARLSAALEHAHLLIFHLRDSKSQALDALLKAG WSTTGIVTLSQLISFLAFQIRVVAGLKVLNAT >Mature_191_residues TDIIDTLSGIAPGSKGEALRARRPVTKDGAQASWQALFAPGDDSQFSIEERFAVAVFVAALHGQPEIAAFYAEKLATNPA LLSAIQTAASKGTAIGPYGHYPAGPLSSENTEGPAFTVADSEKAILGARLSAALEHAHLLIFHLRDSKSQALDALLKAGW STTGIVTLSQLISFLAFQIRVVAGLKVLNAT
Specific function: Unknown
COG id: COG4950
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20083; Mature: 19952
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDIIDTLSGIAPGSKGEALRARRPVTKDGAQASWQALFAPGDDSQFSIEERFAVAVFVA CCHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHH ALHGQPEIAAFYAEKLATNPALLSAIQTAASKGTAIGPYGHYPAGPLSSENTEGPAFTVA HHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEE DSEKAILGARLSAALEHAHLLIFHLRDSKSQALDALLKAGWSTTGIVTLSQLISFLAFQI CCCHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH RVVAGLKVLNAT HHHHHHHHHCCC >Mature Secondary Structure TDIIDTLSGIAPGSKGEALRARRPVTKDGAQASWQALFAPGDDSQFSIEERFAVAVFVA CHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHH ALHGQPEIAAFYAEKLATNPALLSAIQTAASKGTAIGPYGHYPAGPLSSENTEGPAFTVA HHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEE DSEKAILGARLSAALEHAHLLIFHLRDSKSQALDALLKAGWSTTGIVTLSQLISFLAFQI CCCHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH RVVAGLKVLNAT HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA