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The map label for this gene is traH

Identifier: 222102464

GI number: 222102464

Start: 61071

End: 61721

Strand: Direct

Name: traH

Synonym: Avi_7067

Alternate gene names: NA

Gene position: 61071-61721 (Clockwise)

Preceding gene: 222102463

Following gene: 222102465

Centisome position: 9.67

GC content: 55.15

Gene sequence:

>651_bases
ATGGTCGATGCTGCCCTTATCCAGCAATGCGCCGATCCTGCTCTAAAACCCGCAATCGTCGAGCAGTTCATCGAACGGGC
AGGGTCCCAGGATCCACTCTTTATTAAGGTTCGCTCTGGGAGCCGAGTCATTCTGGTACCTAAGCCAGCGACACCGGATG
ATGCCCTGACGCTGATCCGTAACAACCTCGGTCGAAACACCGTGCGCGTTGGGATAACTCAATATCCCGCTGGCCTCGGC
ATCCTGGAGGCCGGGCAACTGAAGCCCGACCTCGTCGATGCATGTACGAACATCCGCATGGGCACGGCGCTGTTTGCCAA
GGTCTACCGGATCGTCACCAAATGGTATGGCAATCCAACCAACAAAGATGTGCTGCCACAGGTACTCGATGATGCCATCA
TTGCTTGGCAGACGGGGTATTTCGAGGGGGTGGCGGTGTTTCGGGCAGAGGATCCCGTGGACGGGAAGATTGATGAGTTC
GAGCAAGACGGAAAAGGTTCCACCCGTAGAGAGGATGAGAATGAAATCAACCATACGACAGCACCGGCTGGCAATGATAC
AGACGACCCAAACAGCGCAGGCATTCGGATTGACCTTTCAGGTATTGGTGCTCGTTCGCAATACAACGGCTTAGCAGGCG
ATCCCAATTAG

Upstream 100 bases:

>100_bases
GCACCTCGATCGTTGCCATCCAGAAGGCAAGCGTGACTGCCTGGGGCAGGCTGTTCGGCGTGCCCGTCATCGTGGCGTTC
AACACATAGGATATTTCCCG

Downstream 100 bases:

>100_bases
GCTTGACGGCGCCGATCTTCCAAAATGTTCTCGGTAACGTCTCCCCAGCGAGCGAAAATGCCAAGGATAGATACCTCTTC
ATCCTTGACAATAAGGGCTA

Product: conjugal transfer protein TraH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MVDAALIQQCADPALKPAIVEQFIERAGSQDPLFIKVRSGSRVILVPKPATPDDALTLIRNNLGRNTVRVGITQYPAGLG
ILEAGQLKPDLVDACTNIRMGTALFAKVYRIVTKWYGNPTNKDVLPQVLDDAIIAWQTGYFEGVAVFRAEDPVDGKIDEF
EQDGKGSTRREDENEINHTTAPAGNDTDDPNSAGIRIDLSGIGARSQYNGLAGDPN

Sequences:

>Translated_216_residues
MVDAALIQQCADPALKPAIVEQFIERAGSQDPLFIKVRSGSRVILVPKPATPDDALTLIRNNLGRNTVRVGITQYPAGLG
ILEAGQLKPDLVDACTNIRMGTALFAKVYRIVTKWYGNPTNKDVLPQVLDDAIIAWQTGYFEGVAVFRAEDPVDGKIDEF
EQDGKGSTRREDENEINHTTAPAGNDTDDPNSAGIRIDLSGIGARSQYNGLAGDPN
>Mature_216_residues
MVDAALIQQCADPALKPAIVEQFIERAGSQDPLFIKVRSGSRVILVPKPATPDDALTLIRNNLGRNTVRVGITQYPAGLG
ILEAGQLKPDLVDACTNIRMGTALFAKVYRIVTKWYGNPTNKDVLPQVLDDAIIAWQTGYFEGVAVFRAEDPVDGKIDEF
EQDGKGSTRREDENEINHTTAPAGNDTDDPNSAGIRIDLSGIGARSQYNGLAGDPN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.tumefaciens Ti plasmid conjugal transfer region I ORFR2 and ORFR3 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010680 [H]

Pfam domain/function: PF06871 TraH_2 [H]

EC number: NA

Molecular weight: Translated: 23332; Mature: 23332

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDAALIQQCADPALKPAIVEQFIERAGSQDPLFIKVRSGSRVILVPKPATPDDALTLIR
CCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHH
NNLGRNTVRVGITQYPAGLGILEAGQLKPDLVDACTNIRMGTALFAKVYRIVTKWYGNPT
HHCCCCEEEEEEEECCCCCCEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
NKDVLPQVLDDAIIAWQTGYFEGVAVFRAEDPVDGKIDEFEQDGKGSTRREDENEINHTT
CHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCCCHHCCCCC
APAGNDTDDPNSAGIRIDLSGIGARSQYNGLAGDPN
CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVDAALIQQCADPALKPAIVEQFIERAGSQDPLFIKVRSGSRVILVPKPATPDDALTLIR
CCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHH
NNLGRNTVRVGITQYPAGLGILEAGQLKPDLVDACTNIRMGTALFAKVYRIVTKWYGNPT
HHCCCCEEEEEEEECCCCCCEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
NKDVLPQVLDDAIIAWQTGYFEGVAVFRAEDPVDGKIDEFEQDGKGSTRREDENEINHTT
CHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCCCHHCCCCC
APAGNDTDDPNSAGIRIDLSGIGARSQYNGLAGDPN
CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]