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The map label for this gene is traF [H]

Identifier: 222102462

GI number: 222102462

Start: 59394

End: 59903

Strand: Direct

Name: traF [H]

Synonym: Avi_7065

Alternate gene names: 222102462

Gene position: 59394-59903 (Clockwise)

Preceding gene: 222102461

Following gene: 222102463

Centisome position: 9.4

GC content: 60.78

Gene sequence:

>510_bases
TTGTCTCTGGCGGGTGTCGGCGTGGTCATCTCCAGTCTTGTCGCGACCGGGTGGATTGGCGGCTATCGACTGAACCTGAC
GCCAAGCGAGCCACTCGGGCTGTGGCGTATCGATGCGCTTTTCCGCGACGTCGATGTCGGAGATCTCGTGTTCGTCTGCC
CGCCGGCTACAGCCACATTCGAAGAGGCATGGCAGCGCGGCTATCTCCGGCGCGGACTGTGTGCCAGCGGCTTTGCACCG
CTCATCAAAACTGTTGCAGCACTCCCTGGCCAGCACGTCGCCATTGGCGAAACGATCGAAGTCGATGGCGTGCCGCTGGG
CGCATCCCGCCTCCGAAAAAGTGATGGGCAACGGCGGGTGATCGTCCCGTATTCCGGTGGTGTTGTGCCGCGAGGATACC
TGTTTCTCCACTCATCCTTTGAGAGCTCCTATGACTCACGATATTTTGGACCGATCCCCGATAGCGGGCTCCTCGGGCTT
GCCAAGCCGATCCTCACGTTTGATCCCTGA

Upstream 100 bases:

>100_bases
CCCACGAACGCACCGTGCAGTCATTGAAGCAGTCGGGGGAATTGCGTCTCACCCAGAGCCAGACCTCGGTGCTCAAGCAA
TAACGCGGCGGCAGCTACTC

Downstream 100 bases:

>100_bases
AAGCTGGCGCGGACCGGTCCTGGTCGGGCTGTCGATCGTGGCTGGGACGGTCGGCTGGAGTGGAAACATCATGACCTTGC
CGGTCGTGATGCTGTTCCCG

Product: conjugal transfer pilin processing protease TraF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MSLAGVGVVISSLVATGWIGGYRLNLTPSEPLGLWRIDALFRDVDVGDLVFVCPPATATFEEAWQRGYLRRGLCASGFAP
LIKTVAALPGQHVAIGETIEVDGVPLGASRLRKSDGQRRVIVPYSGGVVPRGYLFLHSSFESSYDSRYFGPIPDSGLLGL
AKPILTFDP

Sequences:

>Translated_169_residues
MSLAGVGVVISSLVATGWIGGYRLNLTPSEPLGLWRIDALFRDVDVGDLVFVCPPATATFEEAWQRGYLRRGLCASGFAP
LIKTVAALPGQHVAIGETIEVDGVPLGASRLRKSDGQRRVIVPYSGGVVPRGYLFLHSSFESSYDSRYFGPIPDSGLLGL
AKPILTFDP
>Mature_168_residues
SLAGVGVVISSLVATGWIGGYRLNLTPSEPLGLWRIDALFRDVDVGDLVFVCPPATATFEEAWQRGYLRRGLCASGFAPL
IKTVAALPGQHVAIGETIEVDGVPLGASRLRKSDGQRRVIVPYSGGVVPRGYLFLHSSFESSYDSRYFGPIPDSGLLGLA
KPILTFDP

Specific function: Involved in conjugal transfer of the plasmid (Potential) [H]

COG id: COG4959

COG function: function code OU; Type IV secretory pathway, protease TraF

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S26C family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015927
- InterPro:   IPR011056
- InterPro:   IPR019533
- InterPro:   IPR014139 [H]

Pfam domain/function: PF10502 Peptidase_S26 [H]

EC number: NA

Molecular weight: Translated: 18092; Mature: 17961

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLAGVGVVISSLVATGWIGGYRLNLTPSEPLGLWRIDALFRDVDVGDLVFVCPPATATF
CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHH
EEAWQRGYLRRGLCASGFAPLIKTVAALPGQHVAIGETIEVDGVPLGASRLRKSDGQRRV
HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCEEEECCCCCCHHHHHHCCCCEEE
IVPYSGGVVPRGYLFLHSSFESSYDSRYFGPIPDSGLLGLAKPILTFDP
EEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCEECCC
>Mature Secondary Structure 
SLAGVGVVISSLVATGWIGGYRLNLTPSEPLGLWRIDALFRDVDVGDLVFVCPPATATF
CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHH
EEAWQRGYLRRGLCASGFAPLIKTVAALPGQHVAIGETIEVDGVPLGASRLRKSDGQRRV
HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCEEEECCCCCCHHHHHHCCCCEEE
IVPYSGGVVPRGYLFLHSSFESSYDSRYFGPIPDSGLLGLAKPILTFDP
EEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8763953; 11743193; 11743194 [H]