| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102457
Identifier: 222102457
GI number: 222102457
Start: 52567
End: 52872
Strand: Reverse
Name: 222102457
Synonym: Avi_7058
Alternate gene names: NA
Gene position: 52872-52567 (Counterclockwise)
Preceding gene: 222102458
Following gene: 222102456
Centisome position: 8.37
GC content: 51.31
Gene sequence:
>306_bases ATGTCGGCTGTGTTCATGATGGCCTCCGATCAATGTTCACTTTATGTTCTCATCATCGATAGAGAACGTCAAGCCTCAAC ACGACATATCGAAGATCCCCATTGCATGTTCGACGTGCATCTTATCAAGAGATTCCAGGACACCGCGCGTTTGGTGCCAT CTTCAACGGATGATCTTACGACCGCAAAAGAGCACATTGGCCGTCATTGCGAATTTGCCCGCGGGATCGCGCTGCAACCC GAATGGGACAACACCACCTCGCCCATTTCGGTATTGTCCAACAGCGGCGGTTCATCACGGCTTTGA
Upstream 100 bases:
>100_bases CATGGCCTCTGCCTTGCGTTGCATTTCCAAGCGTTGAGCCATGTGGACCTCACGGGCGGCTCGTATCTTGGATATTTCCT GCCTGGCGTTTTGAATTGCA
Downstream 100 bases:
>100_bases ATCAATCAAGCCATATCGATTCTGAAAAGTCGTTGGACGCAACTCCAATAGGAAACAACAATGCAGTCATGGAAAAAGAC GCGAAAGACCTGGTTCATCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 101; Mature: 100
Protein sequence:
>101_residues MSAVFMMASDQCSLYVLIIDRERQASTRHIEDPHCMFDVHLIKRFQDTARLVPSSTDDLTTAKEHIGRHCEFARGIALQP EWDNTTSPISVLSNSGGSSRL
Sequences:
>Translated_101_residues MSAVFMMASDQCSLYVLIIDRERQASTRHIEDPHCMFDVHLIKRFQDTARLVPSSTDDLTTAKEHIGRHCEFARGIALQP EWDNTTSPISVLSNSGGSSRL >Mature_100_residues SAVFMMASDQCSLYVLIIDRERQASTRHIEDPHCMFDVHLIKRFQDTARLVPSSTDDLTTAKEHIGRHCEFARGIALQPE WDNTTSPISVLSNSGGSSRL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11349; Mature: 11218
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAVFMMASDQCSLYVLIIDRERQASTRHIEDPHCMFDVHLIKRFQDTARLVPSSTDDLT CCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH TAKEHIGRHCEFARGIALQPEWDNTTSPISVLSNSGGSSRL HHHHHHCCCCHHHCCCCCCCCCCCCCCCCEEEECCCCCCCC >Mature Secondary Structure SAVFMMASDQCSLYVLIIDRERQASTRHIEDPHCMFDVHLIKRFQDTARLVPSSTDDLT CEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH TAKEHIGRHCEFARGIALQPEWDNTTSPISVLSNSGGSSRL HHHHHHCCCCHHHCCCCCCCCCCCCCCCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA