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The map label for this gene is yqhC [H]

Identifier: 222102441

GI number: 222102441

Start: 38508

End: 39440

Strand: Direct

Name: yqhC [H]

Synonym: Avi_7040

Alternate gene names: 222102441

Gene position: 38508-39440 (Clockwise)

Preceding gene: 222102439

Following gene: 222102444

Centisome position: 6.1

GC content: 58.84

Gene sequence:

>933_bases
ATGAAGTTGTTGCCAAATCCTATGATTGACGGACATCGCCAATCGATGCGAGACCAGCTGGTAGAATTGGCCGGCGGTCT
AGCCACGCGTCACGGATACAATCCGACCGGACTCGATCCCGTTCGCATTCTGCGCACTGAGGCCGTGCTCCACGATGTCC
CGGTCCTCTATAACCCAGGCGCGGTGTTCGTCCTTCAGGGCAGCAAGCAGGGCATGCTGGACGGAGAAATCTTCCGCTAC
GATGAAGACCACTATCTGGCTGTTTCTGTCCCCGTGCCTTTCCGGATGGAATCGACCGCCAGTCCGAAGCGGCCATTGCT
TGCGGTCTATCTCGAATTCGATATGCAGTTGGCGGCTGAGATCGCCCTGCAGGTCGAAAAGCGCAGCGAGCTTGCTGGTC
ATCCGCCACGCGGTCTGATGTCGAACAAGATGGATGCTGACATCGAGGACGTCCTGTTACGCCTGTTGAGGGCGCTTCGC
AGTCCGGTCGAAAGTGCCGTTCTGGGTGCGGGCATTCTGCGCGAACTGCACTATCGGGTGCTGGTCGGTCCGCAAGGCGG
CGCAATGATTGCCGCGCTTCAGCACAGTGGGCCATACGGGAAAATCTTCCGGAGCCTGGCCTGGCTGCGGGAGCACTACA
GCACTGAAATCTCCATCGCCGACCTGGCAGGCAGGGTGGGCATGAGCGTGCCGTCCTACCATGTGCATTTCAAGGACCTG
ACTTGCACCAGTCCGATGCAATACGTGAAGGCCATGCGGCTGCACGAAGCAAGATTGATCATCGCCCGCCAGGAAAAGAC
GATTGCGATGGTCGCGACGTCAGTCGGTTATGCAAGCCCGGCCCAGTTCAGCCGAGACTTTAAGCGACATTTCGGTCGCA
CAGCGTCGGAGGAGGCCAAATGGGTCAGACACCACCTTGGCGAACTCGTCTGA

Upstream 100 bases:

>100_bases
TGATGAAAAAGGTCTTTCTCGACATGATGTGCGAACTTCCTTGATTGCAGAGACGTTTGACCGATAGTATTAATCGTCCG
GCTGAACGATTGCAGATCCG

Downstream 100 bases:

>100_bases
GCCTAAGCGAGGAGGCATAGTGCTCGTTCCGGCAATCTGTCACATGTGGGCGTTCGCTACGACCATTCGATTGGGAGTTG
TGGCCACTATGCAACCTGTT

Product: transcriptional regulator AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MKLLPNPMIDGHRQSMRDQLVELAGGLATRHGYNPTGLDPVRILRTEAVLHDVPVLYNPGAVFVLQGSKQGMLDGEIFRY
DEDHYLAVSVPVPFRMESTASPKRPLLAVYLEFDMQLAAEIALQVEKRSELAGHPPRGLMSNKMDADIEDVLLRLLRALR
SPVESAVLGAGILRELHYRVLVGPQGGAMIAALQHSGPYGKIFRSLAWLREHYSTEISIADLAGRVGMSVPSYHVHFKDL
TCTSPMQYVKAMRLHEARLIIARQEKTIAMVATSVGYASPAQFSRDFKRHFGRTASEEAKWVRHHLGELV

Sequences:

>Translated_310_residues
MKLLPNPMIDGHRQSMRDQLVELAGGLATRHGYNPTGLDPVRILRTEAVLHDVPVLYNPGAVFVLQGSKQGMLDGEIFRY
DEDHYLAVSVPVPFRMESTASPKRPLLAVYLEFDMQLAAEIALQVEKRSELAGHPPRGLMSNKMDADIEDVLLRLLRALR
SPVESAVLGAGILRELHYRVLVGPQGGAMIAALQHSGPYGKIFRSLAWLREHYSTEISIADLAGRVGMSVPSYHVHFKDL
TCTSPMQYVKAMRLHEARLIIARQEKTIAMVATSVGYASPAQFSRDFKRHFGRTASEEAKWVRHHLGELV
>Mature_310_residues
MKLLPNPMIDGHRQSMRDQLVELAGGLATRHGYNPTGLDPVRILRTEAVLHDVPVLYNPGAVFVLQGSKQGMLDGEIFRY
DEDHYLAVSVPVPFRMESTASPKRPLLAVYLEFDMQLAAEIALQVEKRSELAGHPPRGLMSNKMDADIEDVLLRLLRALR
SPVESAVLGAGILRELHYRVLVGPQGGAMIAALQHSGPYGKIFRSLAWLREHYSTEISIADLAGRVGMSVPSYHVHFKDL
TCTSPMQYVKAMRLHEARLIIARQEKTIAMVATSVGYASPAQFSRDFKRHFGRTASEEAKWVRHHLGELV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=309, Percent_Identity=33.6569579288026, Blast_Score=184, Evalue=8e-48,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34566; Mature: 34566

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLPNPMIDGHRQSMRDQLVELAGGLATRHGYNPTGLDPVRILRTEAVLHDVPVLYNPG
CCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEECCC
AVFVLQGSKQGMLDGEIFRYDEDHYLAVSVPVPFRMESTASPKRPLLAVYLEFDMQLAAE
EEEEEECCCCCCCCCEEEEECCCCEEEEECCCCEEECCCCCCCCCEEEEEEHHHHHHHHH
IALQVEKRSELAGHPPRGLMSNKMDADIEDVLLRLLRALRSPVESAVLGAGILRELHYRV
HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEE
LVGPQGGAMIAALQHSGPYGKIFRSLAWLREHYSTEISIADLAGRVGMSVPSYHVHFKDL
EECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEHHHHHHHHCCCCCCEEEEEECC
TCTSPMQYVKAMRLHEARLIIARQEKTIAMVATSVGYASPAQFSRDFKRHFGRTASEEAK
CCCCHHHHHHHHHHHHHHEEEEECCCEEEEEEHHCCCCCHHHHHHHHHHHCCCCCHHHHH
WVRHHLGELV
HHHHHHHCCC
>Mature Secondary Structure
MKLLPNPMIDGHRQSMRDQLVELAGGLATRHGYNPTGLDPVRILRTEAVLHDVPVLYNPG
CCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEECCC
AVFVLQGSKQGMLDGEIFRYDEDHYLAVSVPVPFRMESTASPKRPLLAVYLEFDMQLAAE
EEEEEECCCCCCCCCEEEEECCCCEEEEECCCCEEECCCCCCCCCEEEEEEHHHHHHHHH
IALQVEKRSELAGHPPRGLMSNKMDADIEDVLLRLLRALRSPVESAVLGAGILRELHYRV
HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEE
LVGPQGGAMIAALQHSGPYGKIFRSLAWLREHYSTEISIADLAGRVGMSVPSYHVHFKDL
EECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEHHHHHHHHCCCCCCEEEEEECC
TCTSPMQYVKAMRLHEARLIIARQEKTIAMVATSVGYASPAQFSRDFKRHFGRTASEEAK
CCCCHHHHHHHHHHHHHHEEEEECCCEEEEEEHHCCCCCHHHHHHHHHHHCCCCCHHHHH
WVRHHLGELV
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]