Click here to switch to the map view.

The map label for this gene is dppB [H]

Identifier: 222102425

GI number: 222102425

Start: 19628

End: 20629

Strand: Direct

Name: dppB [H]

Synonym: Avi_7019

Alternate gene names: 222102425

Gene position: 19628-20629 (Clockwise)

Preceding gene: 222102424

Following gene: 222102426

Centisome position: 3.11

GC content: 57.68

Gene sequence:

>1002_bases
ATGCTTCGCTTCATCGTGGAACGGGTCTTTTCGGCGCTGTTGACGCTTTTGGGCGCCTCCCTTATTGCCTTCATCGTGCT
GCGCGCCGTGCCGACAAACCCCGCACGTCTCATTGCTGGCCCCTTCGCGACAGACGAGGTCATCGGGCAGGTGGAGGCAG
CGCTTGGCCTCAATAAGCCGCTTTACATACAATATGCTGATTATATTGTCGGATTTGTCAGAGGCGACTGGGGGTTCTCC
TATAGCGCCGGCCAGCCGGTGCTTCAGCAGATCGGGCAACGCCTGCCAGCTAGCGCGGAACTCGCGCTTTACGCCTTTCT
CTTTGCCTTCATTGGCGCGATATTCCTGACGGTGTTTTCCGTCTTTGCGCGTTCGCGCTGGCTCGATCGGTTGCTGCGTG
GCTCTGCTTTCGTTTTTGTTGGCGTTCCCCCTTTCTGGATCGCGCTGCTTTTCCTGATCGTCTTTTCGGAGAATCTCGGC
TGGTTCCCAGGTCCTGTTGGGCGTGGCGATGCGCCTCCGGTGGTCGTGACAGGGCTCTATAGTATAGACTTCCTGCTCGG
CGGCGACGTGTCCGGGTTCTTCGGCGCGCTTCACTATCTGGCGCTTCCGAGTGTGACGCTCGCGCTCGGATCGCTCGGTT
ATCTTATCCGGCTACTGCGCGCCAATCTGCTCGATACGGCAAACGAACCGTTTGTCACGGTGCTCCACGCCAAAGGCGTT
CGGGGCCTTGTGATTGCATTTGGCCATGTGTTGCCGAATGCCTTCTTGCCAACGCTCACGGCTGGTGGGTTGATCCTTGC
TCAGTTGCTGGGCGGGTCCGTGCTAGTCGAGCGCATCTATACCTGGCCCGGTGTCGGCGGGTTGGTGATTGATGGTATCC
TCAGGCAGGATTATGCTGTGGTGCAGGCCTTCATCCTCTTAAGCGCGTTGATCTATATCGTCGTCAACTTCCTTATTGAC
ATCCTTTACGGTGTTGTCGATCCAAGGGTGAGGCGCTCATGA

Upstream 100 bases:

>100_bases
CCGGCCTTGGCATCTTCCTTCTGGCTGCATCCGCGAACCTGATCGCCGACCGCCTCCGCGAATATTACGATCCAAAATCC
GCGAAGGGAGGGCATTAAAC

Downstream 100 bases:

>100_bases
CCATGAACACTCAACCTTCCTCCACCGCCGCGCTTCTGACCGTCTCCGATCTGAACACGACCTTCGACACGGCGCGCGGC
CTCGTCAACAGTGTGGATGG

Product: ABC transporter membrane spanning protein (dipeptide)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MLRFIVERVFSALLTLLGASLIAFIVLRAVPTNPARLIAGPFATDEVIGQVEAALGLNKPLYIQYADYIVGFVRGDWGFS
YSAGQPVLQQIGQRLPASAELALYAFLFAFIGAIFLTVFSVFARSRWLDRLLRGSAFVFVGVPPFWIALLFLIVFSENLG
WFPGPVGRGDAPPVVVTGLYSIDFLLGGDVSGFFGALHYLALPSVTLALGSLGYLIRLLRANLLDTANEPFVTVLHAKGV
RGLVIAFGHVLPNAFLPTLTAGGLILAQLLGGSVLVERIYTWPGVGGLVIDGILRQDYAVVQAFILLSALIYIVVNFLID
ILYGVVDPRVRRS

Sequences:

>Translated_333_residues
MLRFIVERVFSALLTLLGASLIAFIVLRAVPTNPARLIAGPFATDEVIGQVEAALGLNKPLYIQYADYIVGFVRGDWGFS
YSAGQPVLQQIGQRLPASAELALYAFLFAFIGAIFLTVFSVFARSRWLDRLLRGSAFVFVGVPPFWIALLFLIVFSENLG
WFPGPVGRGDAPPVVVTGLYSIDFLLGGDVSGFFGALHYLALPSVTLALGSLGYLIRLLRANLLDTANEPFVTVLHAKGV
RGLVIAFGHVLPNAFLPTLTAGGLILAQLLGGSVLVERIYTWPGVGGLVIDGILRQDYAVVQAFILLSALIYIVVNFLID
ILYGVVDPRVRRS
>Mature_333_residues
MLRFIVERVFSALLTLLGASLIAFIVLRAVPTNPARLIAGPFATDEVIGQVEAALGLNKPLYIQYADYIVGFVRGDWGFS
YSAGQPVLQQIGQRLPASAELALYAFLFAFIGAIFLTVFSVFARSRWLDRLLRGSAFVFVGVPPFWIALLFLIVFSENLG
WFPGPVGRGDAPPVVVTGLYSIDFLLGGDVSGFFGALHYLALPSVTLALGSLGYLIRLLRANLLDTANEPFVTVLHAKGV
RGLVIAFGHVLPNAFLPTLTAGGLILAQLLGGSVLVERIYTWPGVGGLVIDGILRQDYAVVQAFILLSALIYIVVNFLID
ILYGVVDPRVRRS

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787761, Length=329, Percent_Identity=37.9939209726444, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1787053, Length=331, Percent_Identity=34.1389728096677, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI1789965, Length=342, Percent_Identity=34.2105263157895, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1789888, Length=337, Percent_Identity=32.9376854599407, Blast_Score=185, Evalue=3e-48,
Organism=Escherichia coli, GI1787497, Length=332, Percent_Identity=29.5180722891566, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1787550, Length=278, Percent_Identity=30.2158273381295, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1788504, Length=288, Percent_Identity=28.125, Blast_Score=89, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36012; Mature: 36012

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
0.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRFIVERVFSALLTLLGASLIAFIVLRAVPTNPARLIAGPFATDEVIGQVEAALGLNKP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEECCCHHHHHHHHHHHHHCCCCC
LYIQYADYIVGFVRGDWGFSYSAGQPVLQQIGQRLPASAELALYAFLFAFIGAIFLTVFS
EEEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
VFARSRWLDRLLRGSAFVFVGVPPFWIALLFLIVFSENLGWFPGPVGRGDAPPVVVTGLY
HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEHHH
SIDFLLGGDVSGFFGALHYLALPSVTLALGSLGYLIRLLRANLLDTANEPFVTVLHAKGV
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
RGLVIAFGHVLPNAFLPTLTAGGLILAQLLGGSVLVERIYTWPGVGGLVIDGILRQDYAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
VQAFILLSALIYIVVNFLIDILYGVVDPRVRRS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC
>Mature Secondary Structure
MLRFIVERVFSALLTLLGASLIAFIVLRAVPTNPARLIAGPFATDEVIGQVEAALGLNKP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEECCCHHHHHHHHHHHHHCCCCC
LYIQYADYIVGFVRGDWGFSYSAGQPVLQQIGQRLPASAELALYAFLFAFIGAIFLTVFS
EEEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
VFARSRWLDRLLRGSAFVFVGVPPFWIALLFLIVFSENLGWFPGPVGRGDAPPVVVTGLY
HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEHHH
SIDFLLGGDVSGFFGALHYLALPSVTLALGSLGYLIRLLRANLLDTANEPFVTVLHAKGV
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
RGLVIAFGHVLPNAFLPTLTAGGLILAQLLGGSVLVERIYTWPGVGGLVIDGILRQDYAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
VQAFILLSALIYIVVNFLIDILYGVVDPRVRRS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]