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The map label for this gene is repC [H]

Identifier: 222102415

GI number: 222102415

Start: 2470

End: 3684

Strand: Direct

Name: repC [H]

Synonym: Avi_7002

Alternate gene names: 222102415

Gene position: 2470-3684 (Clockwise)

Preceding gene: 222102414

Following gene: 222102417

Centisome position: 0.39

GC content: 50.62

Gene sequence:

>1215_bases
ATGGAGACTGGAAATGTAACGACGCCCTTCGGGCGGCGGGGTATGACGCTTGCGCTGGTGCGTCGGCAGGTCGCCACAAG
CGACATTAAGCCGGGCAAACGTGCGGATAAATGGAAAATATTCAGGGATGCTTCAGCCGCAATGGACTTGCTTGGGATAC
AATCCAACAGTCTTGCGGTTCTCGATGCCTTATTGAGCTTTTATCCGGAGAATGAGCTGCGGCAGGATGCACAGCTTGTT
GTTTTTCCCTCAAATGCTCAACTTGCTCTTCGGGCGCACGGTTTGGCCGGGGCGACTTTACGCCGGCATATTGCCGTGCT
TGTCGATGCAGGCCTGATCGTTCGTAAAGATAGCGCCAATGGAAAACGCTACGCGCGTAAGGATAATGCCGGTCAAATCG
AGGAGGCATTTGGCTTCGATTTATCACCCCTTCTCGCGCGCTCAGAGGAGCTTGCGATTATGGCGCAACAGGTGATGGCT
GATCGCGCCACCTTTAGAAAAGCCAAGGAAAGCCTTACCATTTGCCGCCGAGATGTCCGCAAGCTGATCACGGCTGCGAT
CGAGGAGGGCGCGCAAGGTGACTGGCACGAGATCGAATGCGCTTATATCTCTCTCGTCGGCAAAATATCCAGAACCCCAG
CTCTTTCTGAGGTCGCATTGGTTTTAGATGAGATGAATAGTCTTAAGAGAGACATCATTAAGCGACTGGAAAATCAGGTT
AATTCAGAAAAAAATAGCGCCAATGCCGCTCAAATTGAGCGGCACATACAGAATTCAAAAACCAACTACATAACTGAATT
TGAACCTCGCTCTCGAAAAGAGCAAGAAGCGACTGAGGAGCAAAACAATCCGCCTAAAAGACTGCCGATAAAGTCATTTC
CGCTTGGAATGGTTTTGAAGGCTTGCCCCTCGGTTTGCGATTACGGACCAGATGGAAAGATCGCAAATTGGCGTGACTTA
ATGACAGCTGCGGTGGTGGTTCGATCTATGTTGGGAGTAAGTCCGTCCGCCTATCAGGAAGCCTGCGAAATCATGGGGCA
AGAGAATGCGGCAACCGCCATTGCATGTATTTTAGAGCGTGCAAATTTTATCAATTCGGCAGGAGGTTATCTGCGCGATC
TAACCCGTCGGTCACAGCAGGGAGAATTTTCTCTAGGGCCTATGATGATGGCTTTGTTAAGGACCAACGGAGAAGCGGGT
ATGAAGACCGGGTAA

Upstream 100 bases:

>100_bases
CTCTAGCAAGAACAGAATCGCATTTCCTCGAATCCTCGTCAAGAGTTTTTGCGCCATTTTGGTGAGTGATTTTCTTTTGC
CTGCTGAAAGGTAAAAGATG

Downstream 100 bases:

>100_bases
AAGATTGAATGAATCCTCCAAAAGGAGGCGGATTGGAGTCAAAATGCGTGCAATTGAGCGGGTGATTTGGTGGTCAGCTG
ACCACAAACATAAGTAATTG

Product: replication initiation protein RepC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
METGNVTTPFGRRGMTLALVRRQVATSDIKPGKRADKWKIFRDASAAMDLLGIQSNSLAVLDALLSFYPENELRQDAQLV
VFPSNAQLALRAHGLAGATLRRHIAVLVDAGLIVRKDSANGKRYARKDNAGQIEEAFGFDLSPLLARSEELAIMAQQVMA
DRATFRKAKESLTICRRDVRKLITAAIEEGAQGDWHEIECAYISLVGKISRTPALSEVALVLDEMNSLKRDIIKRLENQV
NSEKNSANAAQIERHIQNSKTNYITEFEPRSRKEQEATEEQNNPPKRLPIKSFPLGMVLKACPSVCDYGPDGKIANWRDL
MTAAVVVRSMLGVSPSAYQEACEIMGQENAATAIACILERANFINSAGGYLRDLTRRSQQGEFSLGPMMMALLRTNGEAG
MKTG

Sequences:

>Translated_404_residues
METGNVTTPFGRRGMTLALVRRQVATSDIKPGKRADKWKIFRDASAAMDLLGIQSNSLAVLDALLSFYPENELRQDAQLV
VFPSNAQLALRAHGLAGATLRRHIAVLVDAGLIVRKDSANGKRYARKDNAGQIEEAFGFDLSPLLARSEELAIMAQQVMA
DRATFRKAKESLTICRRDVRKLITAAIEEGAQGDWHEIECAYISLVGKISRTPALSEVALVLDEMNSLKRDIIKRLENQV
NSEKNSANAAQIERHIQNSKTNYITEFEPRSRKEQEATEEQNNPPKRLPIKSFPLGMVLKACPSVCDYGPDGKIANWRDL
MTAAVVVRSMLGVSPSAYQEACEIMGQENAATAIACILERANFINSAGGYLRDLTRRSQQGEFSLGPMMMALLRTNGEAG
MKTG
>Mature_404_residues
METGNVTTPFGRRGMTLALVRRQVATSDIKPGKRADKWKIFRDASAAMDLLGIQSNSLAVLDALLSFYPENELRQDAQLV
VFPSNAQLALRAHGLAGATLRRHIAVLVDAGLIVRKDSANGKRYARKDNAGQIEEAFGFDLSPLLARSEELAIMAQQVMA
DRATFRKAKESLTICRRDVRKLITAAIEEGAQGDWHEIECAYISLVGKISRTPALSEVALVLDEMNSLKRDIIKRLENQV
NSEKNSANAAQIERHIQNSKTNYITEFEPRSRKEQEATEEQNNPPKRLPIKSFPLGMVLKACPSVCDYGPDGKIANWRDL
MTAAVVVRSMLGVSPSAYQEACEIMGQENAATAIACILERANFINSAGGYLRDLTRRSQQGEFSLGPMMMALLRTNGEAG
MKTG

Specific function: This protein is coded by a hairy root Ri plasmid, it is probably involved in its replication [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005090
- InterPro:   IPR021760
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03428 RP-C; PF11800 RP-C_C [H]

EC number: NA

Molecular weight: Translated: 44497; Mature: 44497

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METGNVTTPFGRRGMTLALVRRQVATSDIKPGKRADKWKIFRDASAAMDLLGIQSNSLAV
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH
LDALLSFYPENELRQDAQLVVFPSNAQLALRAHGLAGATLRRHIAVLVDAGLIVRKDSAN
HHHHHHHCCCHHHCCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
GKRYARKDNAGQIEEAFGFDLSPLLARSEELAIMAQQVMADRATFRKAKESLTICRRDVR
CCHHHCCCCCCCHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLITAAIEEGAQGDWHEIECAYISLVGKISRTPALSEVALVLDEMNSLKRDIIKRLENQV
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSEKNSANAAQIERHIQNSKTNYITEFEPRSRKEQEATEEQNNPPKRLPIKSFPLGMVLK
CCCCCCCHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
ACPSVCDYGPDGKIANWRDLMTAAVVVRSMLGVSPSAYQEACEIMGQENAATAIACILER
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
ANFINSAGGYLRDLTRRSQQGEFSLGPMMMALLRTNGEAGMKTG
HHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
METGNVTTPFGRRGMTLALVRRQVATSDIKPGKRADKWKIFRDASAAMDLLGIQSNSLAV
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH
LDALLSFYPENELRQDAQLVVFPSNAQLALRAHGLAGATLRRHIAVLVDAGLIVRKDSAN
HHHHHHHCCCHHHCCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
GKRYARKDNAGQIEEAFGFDLSPLLARSEELAIMAQQVMADRATFRKAKESLTICRRDVR
CCHHHCCCCCCCHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLITAAIEEGAQGDWHEIECAYISLVGKISRTPALSEVALVLDEMNSLKRDIIKRLENQV
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSEKNSANAAQIERHIQNSKTNYITEFEPRSRKEQEATEEQNNPPKRLPIKSFPLGMVLK
CCCCCCCHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
ACPSVCDYGPDGKIANWRDLMTAAVVVRSMLGVSPSAYQEACEIMGQENAATAIACILER
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
ANFINSAGGYLRDLTRRSQQGEFSLGPMMMALLRTNGEAGMKTG
HHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA