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The map label for this gene is dnaE [H]

Identifier: 222097065

GI number: 222097065

Start: 3352333

End: 3353280

Strand: Reverse

Name: dnaE [H]

Synonym: BCQ_3405

Alternate gene names: 222097065

Gene position: 3353280-3352333 (Counterclockwise)

Preceding gene: 222097066

Following gene: 222097064

Centisome position: 64.31

GC content: 33.33

Gene sequence:

>948_bases
GTGGGGAATATATCCTTACCGTTAGATTATGTTGTAATTGACTTTGAAACAACAGGATTTAATCCTTATAATGATAAGAT
CATTCAAGTGGCAGCAGTGAAATATCGTAATCATGAACTAGTAGATCAATTTGTTTCCTATGTGAATCCGGAGCGTCCAA
TTCCGGACCGAATAACGAGTTTAACAGGTATTACAAATTATCGTGTTTCGGATGCACCGACGATTGAAGAAGTGTTACCT
TTATTTTTAGCATTTTTACATACAAATGTAATTGTCGCTCATAATGCATCTTTTGATATGCGCTTTTTGAAAAGTAATGT
GAATATGCTTGGTTTACCGGAACCACAAAATAAAGTGATTGATACTGTGTTTCTAGCAAAGAAATATATGAAGCACGCGC
CTAATCATAAACTTGAAACGTTAAAGCGAATGCTTGGAATTCGTTTAAGTTCTCATAATGCATTTGATGATTGTATTACT
TGTGCAGCAGTTTATCAAAAATGTGCCTTTATTGAAGAAGAGGCGAAAAGGAAATCGAATACAGAAGTACTTGATGAAAC
AGCAGTATATGAAGCGGTAAAAGAGATACTTGTACGAAATAAACGTGATATTGAATGGATTCGTTGCATGAATGTAGGAA
GCTATTTAGATATAAAAGCTTTTTATCCAGTTATGAGATTAAAGGTAAAAGGGCGAAAGAAATACGTATTAACAGACATA
TTAGAAGATGATGTGAAAGAAATATGTACGAGTTTAGCCTGTGAACCGGCGTTAAAAAGTGAAGTTGGTAACACGAGAAT
TATGCTTAATAGCTTAGAGGACGTCCTGAAATTAGAAAGTTATATTTTAGAACAGTATGATTTTGTATTGCAAGCGCTGC
ATGATTATAAACAAAGTGAAATGAATGCAGATGAAAAACTAAAAGAATATTTGAATATTATGGTGTAA

Upstream 100 bases:

>100_bases
TGAAATATAATCATTTCTGCCTTTTCTTTTTCACGTAGTGATAACTGCATGGTATGATAAAAGAAATATAAACGTTGAAA
GATAAAGGAGTGTATTTGGA

Downstream 100 bases:

>100_bases
AAAACTCCGTGTACATTTTACTGTACACGGAGTTTTTTTAGGAGTACTAAAACATAAAATTTTCTTGCAAATCTGATTAA
ATAGTTTTTCCTTTGCTCAT

Product: DNA polymerase iii subunit epsilon

Products: NA

Alternate protein names: PolIII [H]

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MGNISLPLDYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRVSDAPTIEEVLP
LFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCIT
CAAVYQKCAFIEEEAKRKSNTEVLDETAVYEAVKEILVRNKRDIEWIRCMNVGSYLDIKAFYPVMRLKVKGRKKYVLTDI
LEDDVKEICTSLACEPALKSEVGNTRIMLNSLEDVLKLESYILEQYDFVLQALHDYKQSEMNADEKLKEYLNIMV

Sequences:

>Translated_315_residues
MGNISLPLDYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRVSDAPTIEEVLP
LFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCIT
CAAVYQKCAFIEEEAKRKSNTEVLDETAVYEAVKEILVRNKRDIEWIRCMNVGSYLDIKAFYPVMRLKVKGRKKYVLTDI
LEDDVKEICTSLACEPALKSEVGNTRIMLNSLEDVLKLESYILEQYDFVLQALHDYKQSEMNADEKLKEYLNIMV
>Mature_314_residues
GNISLPLDYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRVSDAPTIEEVLPL
FLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITC
AAVYQKCAFIEEEAKRKSNTEVLDETAVYEAVKEILVRNKRDIEWIRCMNVGSYLDIKAFYPVMRLKVKGRKKYVLTDIL
EDDVKEICTSLACEPALKSEVGNTRIMLNSLEDVLKLESYILEQYDFVLQALHDYKQSEMNADEKLKEYLNIMV

Specific function: Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity [H]

COG id: COG2176

COG function: function code L; DNA polymerase III, alpha subunit (gram-positive type)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Escherichia coli, GI1786409, Length=209, Percent_Identity=27.2727272727273, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011708
- InterPro:   IPR006054
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004365
- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR006308
- InterPro:   IPR012337 [H]

Pfam domain/function: PF07733 DNA_pol3_alpha; PF00929 Exonuc_X-T; PF02811 PHP; PF01336 tRNA_anti [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 36274; Mature: 36143

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNISLPLDYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITS
CCCCCCCEEEEEEEEEECCCCCCCCCEEEEEHHHHCCHHHHHHHHHHCCCCCCCHHHHHH
LTGITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPQNKVI
HHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHCCCCEECCCCCHHHHH
DTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAFIEEEAKRKSN
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
TEVLDETAVYEAVKEILVRNKRDIEWIRCMNVGSYLDIKAFYPVMRLKVKGRKKYVLTDI
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEHHHHHHHHHHEECCCCHHHHHHH
LEDDVKEICTSLACEPALKSEVGNTRIMLNSLEDVLKLESYILEQYDFVLQALHDYKQSE
HHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MNADEKLKEYLNIMV
CCHHHHHHHHHHHCC
>Mature Secondary Structure 
GNISLPLDYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITS
CCCCCCEEEEEEEEEECCCCCCCCCEEEEEHHHHCCHHHHHHHHHHCCCCCCCHHHHHH
LTGITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPQNKVI
HHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHCCCCEECCCCCHHHHH
DTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAFIEEEAKRKSN
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
TEVLDETAVYEAVKEILVRNKRDIEWIRCMNVGSYLDIKAFYPVMRLKVKGRKKYVLTDI
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEHHHHHHHHHHEECCCCHHHHHHH
LEDDVKEICTSLACEPALKSEVGNTRIMLNSLEDVLKLESYILEQYDFVLQALHDYKQSE
HHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MNADEKLKEYLNIMV
CCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12552129 [H]