Click here to switch to the map view.

The map label for this gene is tnpA1 [H]

Identifier: 222096961

GI number: 222096961

Start: 3245046

End: 3245453

Strand: Reverse

Name: tnpA1 [H]

Synonym: BCQ_3301

Alternate gene names: 222096961

Gene position: 3245453-3245046 (Counterclockwise)

Preceding gene: 222096968

Following gene: 222096960

Centisome position: 62.24

GC content: 38.24

Gene sequence:

>408_bases
GTGAATATGATACATGATTATAGAAGAACCAAAACAACCGTGTCATTAATTAACTACCATTTTGTGTTTTGCCCGCGATA
CAGAAGAAAGATTTTTCTTAACATAAAAGTAGAAGAACGTTTCAAAGAGTTGGTTCAAGAAATATGCGGAGAAATGGATG
TTGCTATTGTCGCAATGGAATGCGACAAAGACCACGTTCACTTGTTCTTACATACACTACCAACACTTAGTCCTGCTGAC
ACAATGGCGAAAATTAAAGGAGTGACATCGAAGCGTTTGAGAGGAGAGTTTCCTCATCTTCAACACTTGCCAAGTCTATG
GACACGTTCCTATTTTGTTTCTACTGCTGGAAATGTATCGACTGAGACAATTAAACAGTATGTTGAAAATCAAAAGACGA
GGGGGTGA

Upstream 100 bases:

>100_bases
GATACGGAGTACCACTAAAAATCGCTAAGTTTGTGGTACTTTAAGTATCCAAAATATTGGTATCTTTTGTGGTGTAGTTT
AAAAGTAAAACTGATACAAT

Downstream 100 bases:

>100_bases
AAATTGTGTCACAAACAATCACAGTCAAAGTTAAATTGCTTCCAACAAAAGAACAAATTCAGCTATTGGAACAAAGTAGC
TATGAGTATATCAAAGTCAT

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MNMIHDYRRTKTTVSLINYHFVFCPRYRRKIFLNIKVEERFKELVQEICGEMDVAIVAMECDKDHVHLFLHTLPTLSPAD
TMAKIKGVTSKRLRGEFPHLQHLPSLWTRSYFVSTAGNVSTETIKQYVENQKTRG

Sequences:

>Translated_135_residues
MNMIHDYRRTKTTVSLINYHFVFCPRYRRKIFLNIKVEERFKELVQEICGEMDVAIVAMECDKDHVHLFLHTLPTLSPAD
TMAKIKGVTSKRLRGEFPHLQHLPSLWTRSYFVSTAGNVSTETIKQYVENQKTRG
>Mature_135_residues
MNMIHDYRRTKTTVSLINYHFVFCPRYRRKIFLNIKVEERFKELVQEICGEMDVAIVAMECDKDHVHLFLHTLPTLSPAD
TMAKIKGVTSKRLRGEFPHLQHLPSLWTRSYFVSTAGNVSTETIKQYVENQKTRG

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG1943

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 17 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002686 [H]

Pfam domain/function: PF01797 Transposase_17 [H]

EC number: NA

Molecular weight: Translated: 15830; Mature: 15830

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMIHDYRRTKTTVSLINYHFVFCPRYRRKIFLNIKVEERFKELVQEICGEMDVAIVAME
CCCHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEEEHHHHHHHHHHHHHCCCCEEEEEEE
CDKDHVHLFLHTLPTLSPADTMAKIKGVTSKRLRGEFPHLQHLPSLWTRSYFVSTAGNVS
CCCCHHHHHHHHCCCCCCHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCC
TETIKQYVENQKTRG
HHHHHHHHHCCCCCC
>Mature Secondary Structure
MNMIHDYRRTKTTVSLINYHFVFCPRYRRKIFLNIKVEERFKELVQEICGEMDVAIVAME
CCCHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEEEHHHHHHHHHHHHHCCCCEEEEEEE
CDKDHVHLFLHTLPTLSPADTMAKIKGVTSKRLRGEFPHLQHLPSLWTRSYFVSTAGNVS
CCCCHHHHHHHHCCCCCCHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCC
TETIKQYVENQKTRG
HHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]