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The map label for this gene is ydcM [C]

Identifier: 222096960

GI number: 222096960

Start: 3243961

End: 3245040

Strand: Reverse

Name: ydcM [C]

Synonym: BCQ_3300

Alternate gene names: 222096960

Gene position: 3245040-3243961 (Counterclockwise)

Preceding gene: 222096961

Following gene: 222096956

Centisome position: 62.23

GC content: 35.46

Gene sequence:

>1080_bases
GTGTCACAAACAATCACAGTCAAAGTTAAATTGCTTCCAACAAAAGAACAAATTCAGCTATTGGAACAAAGTAGCTATGA
GTATATCAAAGTCATTAATACACTTGTATCTGAAATGGCTGAAGCGAAGAAGAGCACTAAGAAAAGTACAAAAGATGTTG
AAGCTAATCTTCCAAGCGCAGTGAAGAACCAAGCAATTAAAGACGCTAAAAGTATGTTTTCTACAAAGGTGAAAAAAAGT
AAATACAAAGTTATTCCGATTCTAAAGAGACCTGTTTGTGTATGGAACAATCAAAACTATTCGTTTGACTTCACGCACAT
TTCAGTTCCACTCATGGTAAATGGAAAATCAACTCGCTTAAAGGTTCGTGCTTTATTAACTGATAAATATAATCGCAATT
TTAATTTGTTAACACACAAGTTAGGTACACTTCGTATCACGAAGAAATCTAATAAGTGGATTGCTCAAATATCTGTCACG
ATTCCTACAAATGAAAAAACAGGAACGAAGATTTTAGGGGTAGATTTAGGTCTTAAAGTCCCTGCGGTAGCCATCACAGA
CGATGATAAAGTTCGTTTCTTCGGCAATGGTAGACAAAACAAATATATGAAACGTAAGTTTCGTAGTGTTCGTAAGAAGT
TAGGTGAAAATAAGAAATTAAATGCCATTCGACAACTTGATGATAAAGAACAAAGATGGATGCAAGACCAAGACCACAAA
GTAAGTCGTGAAATCATTGACTTTGCAACCGATAATAACATTTCTGTTATTCGTTTAGAACAACTAACGAATATTAGACA
GACGGCAAGAACAAGCCGTAAAAACGAGAGAAATCTACACACTTGGTCATTCTATCGTTTAGCACAATTCATTGAATACA
AAGCGAATTTAGTTGGTATTAAGGTAGAATATGTGAACCCTGCTTATACAAGTCAAACATGTCCGAAATGTTCTGAAAAG
AACAAAGCACCAGACAGAAAATACAAGTGCCGATGTGGATTTGAGAAACATCGTGATATTGTTGGGGCGATGAATATTCG
CTACGCAACTGTGATTGATGGTAACAGTCAATCAGCCTAA

Upstream 100 bases:

>100_bases
GTCTATGGACACGTTCCTATTTTGTTTCTACTGCTGGAAATGTATCGACTGAGACAATTAAACAGTATGTTGAAAATCAA
AAGACGAGGGGGTGAAAATT

Downstream 100 bases:

>100_bases
GATGCTATACGCACTGTCTTAGGAGGGGCAATGAGATGCCCTCATCTTGAAGTCTGTTCAAAACAGAAATGGACTGCGAA
CGTTTAGTCATTCAAGAATC

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 358

Protein sequence:

>359_residues
MSQTITVKVKLLPTKEQIQLLEQSSYEYIKVINTLVSEMAEAKKSTKKSTKDVEANLPSAVKNQAIKDAKSMFSTKVKKS
KYKVIPILKRPVCVWNNQNYSFDFTHISVPLMVNGKSTRLKVRALLTDKYNRNFNLLTHKLGTLRITKKSNKWIAQISVT
IPTNEKTGTKILGVDLGLKVPAVAITDDDKVRFFGNGRQNKYMKRKFRSVRKKLGENKKLNAIRQLDDKEQRWMQDQDHK
VSREIIDFATDNNISVIRLEQLTNIRQTARTSRKNERNLHTWSFYRLAQFIEYKANLVGIKVEYVNPAYTSQTCPKCSEK
NKAPDRKYKCRCGFEKHRDIVGAMNIRYATVIDGNSQSA

Sequences:

>Translated_359_residues
MSQTITVKVKLLPTKEQIQLLEQSSYEYIKVINTLVSEMAEAKKSTKKSTKDVEANLPSAVKNQAIKDAKSMFSTKVKKS
KYKVIPILKRPVCVWNNQNYSFDFTHISVPLMVNGKSTRLKVRALLTDKYNRNFNLLTHKLGTLRITKKSNKWIAQISVT
IPTNEKTGTKILGVDLGLKVPAVAITDDDKVRFFGNGRQNKYMKRKFRSVRKKLGENKKLNAIRQLDDKEQRWMQDQDHK
VSREIIDFATDNNISVIRLEQLTNIRQTARTSRKNERNLHTWSFYRLAQFIEYKANLVGIKVEYVNPAYTSQTCPKCSEK
NKAPDRKYKCRCGFEKHRDIVGAMNIRYATVIDGNSQSA
>Mature_358_residues
SQTITVKVKLLPTKEQIQLLEQSSYEYIKVINTLVSEMAEAKKSTKKSTKDVEANLPSAVKNQAIKDAKSMFSTKVKKSK
YKVIPILKRPVCVWNNQNYSFDFTHISVPLMVNGKSTRLKVRALLTDKYNRNFNLLTHKLGTLRITKKSNKWIAQISVTI
PTNEKTGTKILGVDLGLKVPAVAITDDDKVRFFGNGRQNKYMKRKFRSVRKKLGENKKLNAIRQLDDKEQRWMQDQDHKV
SREIIDFATDNNISVIRLEQLTNIRQTARTSRKNERNLHTWSFYRLAQFIEYKANLVGIKVEYVNPAYTSQTCPKCSEKN
KAPDRKYKCRCGFEKHRDIVGAMNIRYATVIDGNSQSA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 41388; Mature: 41257

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQTITVKVKLLPTKEQIQLLEQSSYEYIKVINTLVSEMAEAKKSTKKSTKDVEANLPSA
CCCEEEEEEEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHH
VKNQAIKDAKSMFSTKVKKSKYKVIPILKRPVCVWNNQNYSFDFTHISVPLMVNGKSTRL
HHHHHHHHHHHHHHHHHHHCCEEEEEEECCCEEEECCCCCEEEEEEEEEEEEECCCCCEE
KVRALLTDKYNRNFNLLTHKLGTLRITKKSNKWIAQISVTIPTNEKTGTKILGVDLGLKV
EEEEEEECCCCCCCEEEEECCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEECCCCC
PAVAITDDDKVRFFGNGRQNKYMKRKFRSVRKKLGENKKLNAIRQLDDKEQRWMQDQDHK
CEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHCCCCHH
VSREIIDFATDNNISVIRLEQLTNIRQTARTSRKNERNLHTWSFYRLAQFIEYKANLVGI
HHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEEEE
KVEYVNPAYTSQTCPKCSEKNKAPDRKYKCRCGFEKHRDIVGAMNIRYATVIDGNSQSA
EEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHEECCEEEEEEECCCCCCC
>Mature Secondary Structure 
SQTITVKVKLLPTKEQIQLLEQSSYEYIKVINTLVSEMAEAKKSTKKSTKDVEANLPSA
CCEEEEEEEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHH
VKNQAIKDAKSMFSTKVKKSKYKVIPILKRPVCVWNNQNYSFDFTHISVPLMVNGKSTRL
HHHHHHHHHHHHHHHHHHHCCEEEEEEECCCEEEECCCCCEEEEEEEEEEEEECCCCCEE
KVRALLTDKYNRNFNLLTHKLGTLRITKKSNKWIAQISVTIPTNEKTGTKILGVDLGLKV
EEEEEEECCCCCCCEEEEECCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEECCCCC
PAVAITDDDKVRFFGNGRQNKYMKRKFRSVRKKLGENKKLNAIRQLDDKEQRWMQDQDHK
CEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHCCCCHH
VSREIIDFATDNNISVIRLEQLTNIRQTARTSRKNERNLHTWSFYRLAQFIEYKANLVGI
HHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEEEE
KVEYVNPAYTSQTCPKCSEKNKAPDRKYKCRCGFEKHRDIVGAMNIRYATVIDGNSQSA
EEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHEECCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]