Click here to switch to the map view.

The map label for this gene is dcyD [H]

Identifier: 222096703

GI number: 222096703

Start: 3001518

End: 3002513

Strand: Reverse

Name: dcyD [H]

Synonym: BCQ_3043

Alternate gene names: 222096703

Gene position: 3002513-3001518 (Counterclockwise)

Preceding gene: 222096704

Following gene: 222096702

Centisome position: 57.58

GC content: 39.66

Gene sequence:

>996_bases
ATGAATTTAGCTAAATTCCCGAGAAAAAAATATACAGAGTCATATACACCAATTGAAAAATTAAACAATTTTTCTGAAGC
ACTTGGTGGACCGACTATTTATTTTAAACGAGATGATTTACTTGGTTTAACAGCTGGTGGTAATAAGACGAGAAAGTTAG
AGTTTCTAGTTGCGGATGCACAGGCAAAGGGTGCAGATACGTTAATTACAGCTGGTGGTATTCAGTCCAATCATTGCCGT
CTGACACTGGCAGCTGCGGTGAAAGAGAAAATGAAATGTATACTTGTATTAGAAGAAGGGCTTGAGCCAGAAGAGAAGCC
AGACTTTAATGGAAACTATTTCTTATATCATTTACTAGGTGCTGAAAATGTCATTGTTGTACAAAACGGAGCAGATCTTA
TGGAAGAGATGCATAAGGTTGCGAAAGAAGTAAGTGAAAAAGGGAACACACCATATGTCATTCCAGTTGGTGGATCAAAT
CCTACTGGCGCAATGGGATACGTTGCTTGTGCGCAAGAAATTATGGCGCAATCATTTGACCAAGGAATTGATTTCAGTTC
AGTCATTTGCGTAAGCGGTAGCGGCGGCATGCACGCTGGTTTAATTACAGGTTTTGCTGGAACACAAAGTAACATCCCAG
TAATCGGAATTAACGTAAGTAGAGGAAAAGCAGAGCAAGAAGAGAAAGTAGCAAAACTTGTAGATGAAACTTCAGCTCAC
GTTGGTATTCCAAACTTTATCCCGCGCGAAGCTGTTACATGCTTTGATGAATATGTAGGACCAGGTTACGCGTTACCAAC
GCCAGAAATGGTGGAAGCAGTGCAGCTGTTAGCAAAAACTGAAGGTATTTTACTGGATCCAGTATACACAGGTAAAGCAG
TAGCGGGATTAATCGACTTAATTAGAAAAGGTACATTTAATAAAGAGGACAACATTTTATTCGTACATTCAGGTGGTTCA
CCAGCTTTATATGCGAATACATCTTTATTCGCGTAA

Upstream 100 bases:

>100_bases
TCCAACACATTTTTACCCCAGAAAGATGACTTCATCATTTTTACATGTAATAATAGTATCGTTACATACATTGTGAAAGA
AGTACAAAGGAGCGTTATTC

Downstream 100 bases:

>100_bases
GTATGAAAAAGCATTGGGTATCCAATGCTTTTTGTTATATACTGGAATTATTAGGAGGCCAGAAGGGGGAGTATATGAGT
TCAAACTTAAAATGGATGAT

Product: d-cysteine desulfhydrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MNLAKFPRKKYTESYTPIEKLNNFSEALGGPTIYFKRDDLLGLTAGGNKTRKLEFLVADAQAKGADTLITAGGIQSNHCR
LTLAAAVKEKMKCILVLEEGLEPEEKPDFNGNYFLYHLLGAENVIVVQNGADLMEEMHKVAKEVSEKGNTPYVIPVGGSN
PTGAMGYVACAQEIMAQSFDQGIDFSSVICVSGSGGMHAGLITGFAGTQSNIPVIGINVSRGKAEQEEKVAKLVDETSAH
VGIPNFIPREAVTCFDEYVGPGYALPTPEMVEAVQLLAKTEGILLDPVYTGKAVAGLIDLIRKGTFNKEDNILFVHSGGS
PALYANTSLFA

Sequences:

>Translated_331_residues
MNLAKFPRKKYTESYTPIEKLNNFSEALGGPTIYFKRDDLLGLTAGGNKTRKLEFLVADAQAKGADTLITAGGIQSNHCR
LTLAAAVKEKMKCILVLEEGLEPEEKPDFNGNYFLYHLLGAENVIVVQNGADLMEEMHKVAKEVSEKGNTPYVIPVGGSN
PTGAMGYVACAQEIMAQSFDQGIDFSSVICVSGSGGMHAGLITGFAGTQSNIPVIGINVSRGKAEQEEKVAKLVDETSAH
VGIPNFIPREAVTCFDEYVGPGYALPTPEMVEAVQLLAKTEGILLDPVYTGKAVAGLIDLIRKGTFNKEDNILFVHSGGS
PALYANTSLFA
>Mature_331_residues
MNLAKFPRKKYTESYTPIEKLNNFSEALGGPTIYFKRDDLLGLTAGGNKTRKLEFLVADAQAKGADTLITAGGIQSNHCR
LTLAAAVKEKMKCILVLEEGLEPEEKPDFNGNYFLYHLLGAENVIVVQNGADLMEEMHKVAKEVSEKGNTPYVIPVGGSN
PTGAMGYVACAQEIMAQSFDQGIDFSSVICVSGSGGMHAGLITGFAGTQSNIPVIGINVSRGKAEQEEKVAKLVDETSAH
VGIPNFIPREAVTCFDEYVGPGYALPTPEMVEAVQLLAKTEGILLDPVYTGKAVAGLIDLIRKGTFNKEDNILFVHSGGS
PALYANTSLFA

Specific function: Catalyzes the alpha,beta-elimination reaction of D- cysteine and of several D-cysteine derivatives. It could be a defense mechanism against D-cysteine [H]

COG id: COG2515

COG function: function code E; 1-aminocyclopropane-1-carboxylate deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ACC deaminase/D-cysteine desulfhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082000, Length=325, Percent_Identity=45.8461538461538, Blast_Score=258, Evalue=5e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005966
- InterPro:   IPR001926 [H]

Pfam domain/function: PF00291 PALP [H]

EC number: =4.4.1.15 [H]

Molecular weight: Translated: 35397; Mature: 35397

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLAKFPRKKYTESYTPIEKLNNFSEALGGPTIYFKRDDLLGLTAGGNKTRKLEFLVADA
CCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCCEEEEEEEECC
QAKGADTLITAGGIQSNHCRLTLAAAVKEKMKCILVLEEGLEPEEKPDFNGNYFLYHLLG
CCCCCCEEEEECCCCCCCEEEEHHHHHHHHCEEEEEEECCCCCCCCCCCCCCEEEEEEEC
AENVIVVQNGADLMEEMHKVAKEVSEKGNTPYVIPVGGSNPTGAMGYVACAQEIMAQSFD
CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
QGIDFSSVICVSGSGGMHAGLITGFAGTQSNIPVIGINVSRGKAEQEEKVAKLVDETSAH
CCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
VGIPNFIPREAVTCFDEYVGPGYALPTPEMVEAVQLLAKTEGILLDPVYTGKAVAGLIDL
CCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHH
IRKGTFNKEDNILFVHSGGSPALYANTSLFA
HHCCCCCCCCCEEEEECCCCCEEEECCCCCC
>Mature Secondary Structure
MNLAKFPRKKYTESYTPIEKLNNFSEALGGPTIYFKRDDLLGLTAGGNKTRKLEFLVADA
CCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCCEEEEEEEECC
QAKGADTLITAGGIQSNHCRLTLAAAVKEKMKCILVLEEGLEPEEKPDFNGNYFLYHLLG
CCCCCCEEEEECCCCCCCEEEEHHHHHHHHCEEEEEEECCCCCCCCCCCCCCEEEEEEEC
AENVIVVQNGADLMEEMHKVAKEVSEKGNTPYVIPVGGSNPTGAMGYVACAQEIMAQSFD
CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
QGIDFSSVICVSGSGGMHAGLITGFAGTQSNIPVIGINVSRGKAEQEEKVAKLVDETSAH
CCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
VGIPNFIPREAVTCFDEYVGPGYALPTPEMVEAVQLLAKTEGILLDPVYTGKAVAGLIDL
CCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHH
IRKGTFNKEDNILFVHSGGSPALYANTSLFA
HHCCCCCCCCCEEEEECCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA