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The map label for this gene is yjhR [C]

Identifier: 222096687

GI number: 222096687

Start: 2979174

End: 2981453

Strand: Reverse

Name: yjhR [C]

Synonym: BCQ_3027

Alternate gene names: 222096687

Gene position: 2981453-2979174 (Counterclockwise)

Preceding gene: 222096690

Following gene: 222096686

Centisome position: 57.18

GC content: 38.46

Gene sequence:

>2280_bases
ATGAATACACCTACTCAAACTCCTTCATTATCGGAAACGATGAAAGAGTGGCATTATGCATTAGCGTATGAAATTAAACA
TTGGAAAACGATAGGTGGTAGTAAAATTTCTATCATGAACGGTCGTTTTTTATATACAGATTATGAAAGTACAGTATACG
TATTTCAGCTTATTTCGGAAGTAAGCTTGCCTGAAGGTTCACCGATTCGAATTGAGTTCGATGGTGAGGAAGCGACAGGA
GAAGTATTATCTGTACATGGATTAGAAATAGAACTGAAATTAAATGATTATATACAAGGTGAAATACGAGAAGCTGTTTT
GTACAGTGAACCGTGGCAGCTTTTAGAGCAACTGCAAGAGAGGTTGAAGGAAGCGCGTAAAGATAAGCTGAAACGTAATC
GTATAAAGCGTCTTGTTGATGGGACGAGTAGTCCGAAACATATTGAGAAGATGAAAAATCCGAAAAATGAATTGGCGTAT
CGCTCGTTTTATAATCCGACAACGTACGTATGGGGACCACCTGGAACAGGGAAGTCTTACAATTTATCACGTATTATTTC
GGCTCATTATCAAAAAGGAAAGTCGGTACTTGTGTTAGCTCATAGTAATGCAGCAGTGGACGTATTAATGAGTGAAGTAA
CAAAGCAAATTGAAAAGAAAAAGAAATGGACGCCTGGTGAAATTGTTCGTTACGGTTATAGTCAACACGAACATATACGA
AATCATGAAACGTTACTTGCGTCGAAGTTAGTTGAAACGACGAACGGGTCTTGGGGTGAGGAGAGACTCTATTTAGAAGA
GACACGACAAGAGCTTCGTGAAAAGATTTTATCGTATAAAGCAACATCTGCTGATAAGAAGCGTATACAAGAGATAGAAA
GTGATCTTCGAAAGCAAAAAGCGAAAATTAAAGAAGTAGAAAAAGAATATATTGAAAATGCGAAAGTGATTGGTGCGACT
TTATCGAAATGTGCTATTGATTCACTTATTTATGAGCGTACATTTGATTTAGTTGTCGTAGATGAAGTGAGTATGGCGTT
TGTTCCGCAAATTGCATTAGCTGCTTCACTTGGAAAACGTATCGTCGTTTGTGGTGACTTTTTACAGTTACCTCCAATTG
CGATGGCAAACCATGAACTCGTTCGAAAATGGCTTGGCGAAGATATGTTTTACCATGCCGGGATTGTGGAGTCTGTTAAT
AAATCAGAAGCACATCCGAACCTGTTTATGTTGCAGGAACAAAGACGTATGCATGCGGATATATCGAAGTTTACGAATTC
GTTTATTTATAAAAATAGAGTATACGATCATCCGTCTGTTTCCGAGCGTAAAGAACTTGCGAAACTACAACCGTTCGCAA
ATGAAGCGAGTGTTTTATTTGATACGAGCCAAATGGGAGCTTTTTCGTTAAAAGACGCTGCTTCAGGATCTCGTTTTAAC
ATTATGTCTGGTTTAGTAGCAATGCAAATGATGTTAATCGGACTGTTAGATGGTGTGCAATCCATTGGTGTTGTGACGCC
TTACAGAGCGCAGTCTCGCTTTTTATCAACGTGTATTAGAGAAATGTTACAGAGAACGAAATACCAAAACATACCTGTTT
TAGCAGCGACAGTTCATAAGTTCCAAGGATCTGAAAGAGATATGATGATTTTTGATACAGTAGATAGTTATCCGCAAGAA
CGACCTGGCGTATTATTCTTTGACCATAAAAACCATCGCCTCGTCAATGTAGCAGTGACAAGAGCGAGAGGGAAGTTTAT
TCAATTATCAGATTGCCACTATATGCGCAAAAATTTATCGAGAAAACAAGCGTTGTCACAATTAACGGCTCATATAGAAC
GCCACGGAGATGTGTATGATCGCACGACATCAAGACAATTGTGGGAACGGAAAATATCGAAACGATTACGCTGGTTTATG
GAAATGAATCTTGAGGAAACGAAAGGGGTATTAAAAGATATTTTAGCAGCAAAACGAAAAATCATTATTTCACTTCCAAG
TACGAAACAAGTAGATAAACGAGTATGGCAAGCGTTAATGCGTACAAATGCGCAAATAACGGTGTATAGTGATGGACCAG
TTCCACTGAAAAATGTAAAGTTACAAAGACAAAATAAAGCATTCCCGTTCCTAGTAATCGATGATGAAATCTTTTGGGCA
GGCGCACCCCTTACATCTCAAATGATGTTTGAAGGTAGTACAGAATTTCCGTACGTATGTGCAAGACTGCAAGCACCAGA
AACCATTGGTGTATTAAAAGGGTTTTTAGATATTCGGTAA

Upstream 100 bases:

>100_bases
GAAAATTAAGAAAATAAGCAAGATAAAAACCTTACAAATTTTAGCGTGTTATATGGTATAGTGAGAAAGTATGTTTGGGG
AGAAGGAAGGAGATTATACG

Downstream 100 bases:

>100_bases
ATTCGGATAGGAATTCCTTGACTTTTATTTGAAATGAACTTAGAATGAATGTAATTTAATATAATTTTATGAAAATTCTT
ATCACGAGAGGTGGAGGGAC

Product: DNA helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 759; Mature: 759

Protein sequence:

>759_residues
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYESTVYVFQLISEVSLPEGSPIRIEFDGEEATG
EVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQERLKEARKDKLKRNRIKRLVDGTSSPKHIEKMKNPKNELAY
RSFYNPTTYVWGPPGTGKSYNLSRIISAHYQKGKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRIQEIESDLRKQKAKIKEVEKEYIENAKVIGAT
LSKCAIDSLIYERTFDLVVVDEVSMAFVPQIALAASLGKRIVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVN
KSEAHPNLFMLQEQRRMHADISKFTNSFIYKNRVYDHPSVSERKELAKLQPFANEASVLFDTSQMGAFSLKDAASGSRFN
IMSGLVAMQMMLIGLLDGVQSIGVVTPYRAQSRFLSTCIREMLQRTKYQNIPVLAATVHKFQGSERDMMIFDTVDSYPQE
RPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLSRKQALSQLTAHIERHGDVYDRTTSRQLWERKISKRLRWFM
EMNLEETKGVLKDILAAKRKIIISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFLVIDDEIFWA
GAPLTSQMMFEGSTEFPYVCARLQAPETIGVLKGFLDIR

Sequences:

>Translated_759_residues
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYESTVYVFQLISEVSLPEGSPIRIEFDGEEATG
EVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQERLKEARKDKLKRNRIKRLVDGTSSPKHIEKMKNPKNELAY
RSFYNPTTYVWGPPGTGKSYNLSRIISAHYQKGKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRIQEIESDLRKQKAKIKEVEKEYIENAKVIGAT
LSKCAIDSLIYERTFDLVVVDEVSMAFVPQIALAASLGKRIVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVN
KSEAHPNLFMLQEQRRMHADISKFTNSFIYKNRVYDHPSVSERKELAKLQPFANEASVLFDTSQMGAFSLKDAASGSRFN
IMSGLVAMQMMLIGLLDGVQSIGVVTPYRAQSRFLSTCIREMLQRTKYQNIPVLAATVHKFQGSERDMMIFDTVDSYPQE
RPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLSRKQALSQLTAHIERHGDVYDRTTSRQLWERKISKRLRWFM
EMNLEETKGVLKDILAAKRKIIISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFLVIDDEIFWA
GAPLTSQMMFEGSTEFPYVCARLQAPETIGVLKGFLDIR
>Mature_759_residues
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYESTVYVFQLISEVSLPEGSPIRIEFDGEEATG
EVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQERLKEARKDKLKRNRIKRLVDGTSSPKHIEKMKNPKNELAY
RSFYNPTTYVWGPPGTGKSYNLSRIISAHYQKGKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRIQEIESDLRKQKAKIKEVEKEYIENAKVIGAT
LSKCAIDSLIYERTFDLVVVDEVSMAFVPQIALAASLGKRIVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVN
KSEAHPNLFMLQEQRRMHADISKFTNSFIYKNRVYDHPSVSERKELAKLQPFANEASVLFDTSQMGAFSLKDAASGSRFN
IMSGLVAMQMMLIGLLDGVQSIGVVTPYRAQSRFLSTCIREMLQRTKYQNIPVLAATVHKFQGSERDMMIFDTVDSYPQE
RPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLSRKQALSQLTAHIERHGDVYDRTTSRQLWERKISKRLRWFM
EMNLEETKGVLKDILAAKRKIIISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFLVIDDEIFWA
GAPLTSQMMFEGSTEFPYVCARLQAPETIGVLKGFLDIR

Specific function: Unknown

COG id: COG1112

COG function: function code L; Superfamily I DNA and RNA helicases and helicase subunits

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DNA2/NAM7 helicase family [H]

Homologues:

Organism=Homo sapiens, GI18375673, Length=426, Percent_Identity=26.7605633802817, Blast_Score=101, Evalue=3e-21,
Organism=Homo sapiens, GI119392094, Length=474, Percent_Identity=26.5822784810127, Blast_Score=98, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI71981659, Length=468, Percent_Identity=25.2136752136752, Blast_Score=97, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17510163, Length=459, Percent_Identity=26.797385620915, Blast_Score=93, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17533987, Length=353, Percent_Identity=24.0793201133144, Blast_Score=70, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17533985, Length=353, Percent_Identity=24.0793201133144, Blast_Score=70, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6322835, Length=494, Percent_Identity=25.3036437246964, Blast_Score=95, Evalue=4e-20,
Organism=Saccharomyces cerevisiae, GI6323726, Length=467, Percent_Identity=24.4111349036403, Blast_Score=86, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6323462, Length=503, Percent_Identity=23.4592445328032, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI18859757, Length=455, Percent_Identity=26.8131868131868, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24660647, Length=455, Percent_Identity=23.0769230769231, Blast_Score=81, Evalue=3e-15,
Organism=Drosophila melanogaster, GI221330969, Length=455, Percent_Identity=23.0769230769231, Blast_Score=81, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR004483 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 87185; Mature: 87185

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYESTVYVFQLISE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCEEEEECCCHHHHHHHHHHH
VSLPEGSPIRIEFDGEEATGEVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQE
HCCCCCCEEEEEECCCCCCCCEEEEECEEEEEEECCHHHHHHHHHHHHCCHHHHHHHHHH
RLKEARKDKLKRNRIKRLVDGTSSPKHIEKMKNPKNELAYRSFYNPTTYVWGPPGTGKSY
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHCCCCCCEEECCCCCCCCC
NLSRIISAHYQKGKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
CHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHH
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRIQEIESDLRKQK
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AKIKEVEKEYIENAKVIGATLSKCAIDSLIYERTFDLVVVDEVSMAFVPQIALAASLGKR
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHCCCE
IVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVNKSEAHPNLFMLQEQRRMHAD
EEEECCHHHCCCCHHCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHH
ISKFTNSFIYKNRVYDHPSVSERKELAKLQPFANEASVLFDTSQMGAFSLKDAASGSRFN
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEHHCCCCCCHH
IMSGLVAMQMMLIGLLDGVQSIGVVTPYRAQSRFLSTCIREMLQRTKYQNIPVLAATVHK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
FQGSERDMMIFDTVDSYPQERPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLS
HCCCCCCEEEEECHHCCCCCCCCEEEEECCCCEEEEEEEEECCCCEEEECCHHHHHHCCH
RKQALSQLTAHIERHGDVYDRTTSRQLWERKISKRLRWFMEMNLEETKGVLKDILAAKRK
HHHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCE
IIISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFLVIDDEIFWA
EEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHCCEEECCCCCCCEEEECCCEEEC
GAPLTSQMMFEGSTEFPYVCARLQAPETIGVLKGFLDIR
CCCHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYESTVYVFQLISE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCEEEEECCCHHHHHHHHHHH
VSLPEGSPIRIEFDGEEATGEVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQE
HCCCCCCEEEEEECCCCCCCCEEEEECEEEEEEECCHHHHHHHHHHHHCCHHHHHHHHHH
RLKEARKDKLKRNRIKRLVDGTSSPKHIEKMKNPKNELAYRSFYNPTTYVWGPPGTGKSY
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHCCCCCCEEECCCCCCCCC
NLSRIISAHYQKGKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
CHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHH
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRIQEIESDLRKQK
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AKIKEVEKEYIENAKVIGATLSKCAIDSLIYERTFDLVVVDEVSMAFVPQIALAASLGKR
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHCCCE
IVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVNKSEAHPNLFMLQEQRRMHAD
EEEECCHHHCCCCHHCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHH
ISKFTNSFIYKNRVYDHPSVSERKELAKLQPFANEASVLFDTSQMGAFSLKDAASGSRFN
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEHHCCCCCCHH
IMSGLVAMQMMLIGLLDGVQSIGVVTPYRAQSRFLSTCIREMLQRTKYQNIPVLAATVHK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
FQGSERDMMIFDTVDSYPQERPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLS
HCCCCCCEEEEECHHCCCCCCCCEEEEECCCCEEEEEEEEECCCCEEEECCHHHHHHCCH
RKQALSQLTAHIERHGDVYDRTTSRQLWERKISKRLRWFMEMNLEETKGVLKDILAAKRK
HHHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCE
IIISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFLVIDDEIFWA
EEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHCCEEECCCCCCCEEEECCCEEEC
GAPLTSQMMFEGSTEFPYVCARLQAPETIGVLKGFLDIR
CCCHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]