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The map label for this gene is rbsD [H]

Identifier: 222096663

GI number: 222096663

Start: 2952897

End: 2953328

Strand: Reverse

Name: rbsD [H]

Synonym: BCQ_3003

Alternate gene names: 222096663

Gene position: 2953328-2952897 (Counterclockwise)

Preceding gene: 222096664

Following gene: 222096662

Centisome position: 56.64

GC content: 39.81

Gene sequence:

>432_bases
ATGCTAAAAGGAATACCGAAAATAATTAGTCCGGATTTAATGAAAGTTCTTTTAGAAATGGGGCATGGGGATGAGATTGT
TTTAGCGGATGGCAATTTCCCTGCTGCCTCTTGCGGGACGAAGCTCATTCGATGTGAAGGTCATGGGGTTCTTGAAGTAT
TACAGGCAATTTTGCAATTCTTTCCACTCGATACGTATAGTAATCATTCTGTTTCGTTAATGAAGGTTGTAAAGGGGGAT
CATGTATCCCCCTCCATTTGGGAAACGTATGATGCGACAATTAAAAAATATGATACTCATTTTGATGGGTTTGAGATGAT
TGACCGCTTTGCGTTTTATGAGAGGGCAAAGAAGGCGTATGCAATTGTTGCAACGAGTGAAAGTGCTCTCTATGCCAATA
TGATTTTAAAAAAGGGCGTGGTTACAGATTAA

Upstream 100 bases:

>100_bases
CCTTTCATGAAATATTTACACCAAAGTTATTAATAGATGCACAAAGTGTAAGTAGTTGAAACGTATTTTCGTTAAGATAA
AAATCGGAAGGGAGATAGAA

Downstream 100 bases:

>100_bases
CGCATGATGAAACTAATATAGTATTTGAATAAAAAATTGATAGGGTAGTAGGTGATAGGATGAGTGAATTGCTACTGAAA
ATGGATGGAATTAGTAAAGC

Product: ribose ABC transporter protein

Products: NA

Alternate protein names: Fucose 1-epimerase; Type-2 mutarotase [H]

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MLKGIPKIISPDLMKVLLEMGHGDEIVLADGNFPAASCGTKLIRCEGHGVLEVLQAILQFFPLDTYSNHSVSLMKVVKGD
HVSPSIWETYDATIKKYDTHFDGFEMIDRFAFYERAKKAYAIVATSESALYANMILKKGVVTD

Sequences:

>Translated_143_residues
MLKGIPKIISPDLMKVLLEMGHGDEIVLADGNFPAASCGTKLIRCEGHGVLEVLQAILQFFPLDTYSNHSVSLMKVVKGD
HVSPSIWETYDATIKKYDTHFDGFEMIDRFAFYERAKKAYAIVATSESALYANMILKKGVVTD
>Mature_143_residues
MLKGIPKIISPDLMKVLLEMGHGDEIVLADGNFPAASCGTKLIRCEGHGVLEVLQAILQFFPLDTYSNHSVSLMKVVKGD
HVSPSIWETYDATIKKYDTHFDGFEMIDRFAFYERAKKAYAIVATSESALYANMILKKGVVTD

Specific function: Involved in the anomeric conversion of L-fucose [H]

COG id: COG4154

COG function: function code G; Fucose dissimilation pathway protein FucU

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. FucU mutarotase subfamily [H]

Homologues:

Organism=Homo sapiens, GI148596947, Length=147, Percent_Identity=46.2585034013605, Blast_Score=142, Evalue=1e-34,
Organism=Homo sapiens, GI148596951, Length=130, Percent_Identity=44.6153846153846, Blast_Score=119, Evalue=7e-28,
Organism=Escherichia coli, GI1789169, Length=140, Percent_Identity=49.2857142857143, Blast_Score=129, Evalue=9e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007721 [H]

Pfam domain/function: PF05025 RbsD_FucU [H]

EC number: NA

Molecular weight: Translated: 15889; Mature: 15889

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKGIPKIISPDLMKVLLEMGHGDEIVLADGNFPAASCGTKLIRCEGHGVLEVLQAILQF
CCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
FPLDTYSNHSVSLMKVVKGDHVSPSIWETYDATIKKYDTHFDGFEMIDRFAFYERAKKAY
CCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEE
AIVATSESALYANMILKKGVVTD
EEEEECCCHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLKGIPKIISPDLMKVLLEMGHGDEIVLADGNFPAASCGTKLIRCEGHGVLEVLQAILQF
CCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
FPLDTYSNHSVSLMKVVKGDHVSPSIWETYDATIKKYDTHFDGFEMIDRFAFYERAKKAY
CCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEE
AIVATSESALYANMILKKGVVTD
EEEEECCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA