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The map label for this gene is rbsC [H]

Identifier: 222096661

GI number: 222096661

Start: 2950293

End: 2951297

Strand: Reverse

Name: rbsC [H]

Synonym: BCQ_3001

Alternate gene names: 222096661

Gene position: 2951297-2950293 (Counterclockwise)

Preceding gene: 222096662

Following gene: 222096660

Centisome position: 56.6

GC content: 38.81

Gene sequence:

>1005_bases
ATGGAAATACAAAAGGTAGTCGAACTTCCAGTTAAAGGGAAGATGAGGAAAGGGATGAATACAAATGCTCTTCAGCAGCT
TCTAGCATTTGCAAGTTTAATTGTACTTGTTGTCATTTTTTCAATTGCTTCAGCTAATTTTCTGCAATTTGATAATATTA
TAGGCATCTTTTTATCAACAGCTGTTACAGGCATCCTTGCTTTAGGGGCAACGATGATTATCGTTACAAGTGGAATTGAT
TTATCCTGTGGAACCGTACTAACCTTGTCTTCGGTTATGACAGGTGTGTTTGCTGTCAACTTAGGTTTACCAGTTTGGGT
AGCTGTACTCGGAGGTATTTTAATAGGTGCCGTAGTAGGTTTAATTTCTGGAGCTGCAATTGCAAAATTGAAGATTCCGC
CATTTATTGCAACGTTAGCGATGATGATGATCGCGAAAGGATTGGCACTTGTTATTTCGAAAGCCACTCCAATTTATTTC
ACTTCTATACCAAGCTTTAACAAAATTGCGATGGGTTCTATTATCCCTGGCTTTGCTATTCCGAATGCTGTTTTCATCTT
TTTTGGAATGGCTATTTTCGCAAGCTTAATTTTAAATAAAACGATTATCGGAAGGTATACATTTGCACTAGGAAGCAATG
AAGAAGCAACTAGGCTTTCAGGAGTGAATGTTGATAAGTGGAAAATCATTATCTACATGCTTGCAGGTGTTTTTACTGGT
GTTGCAGGGATCATAATGGCATCTCGTCTAAATTCTGCCCAGCCAGCTTTAGGAGCGGGATATGAATTGGAAGCAATCGC
AGCAGTCGTTATCGGAGGAACTTCTTTAAGTGGTGGTAAAGGAACAATTCTTGGTACTGTTATCGGTGCATTGATTATGA
GTGTGTTAACAAATGGTCTTCAAATCCTTTCCGTACCGCAAGAGTGGCAAACAGTAGTTGTTGGAGCGGTTATCTTATTG
GCAGTTTACGCAGATGTGTTACGAAACAAAAAAGCAAAGAATTAA

Upstream 100 bases:

>100_bases
TTGAAAAATGATGAAAAAGCATCACAAGAAGCAATTATGACTCTTGCAACAAAACGTATTATGTAATGGATACTAACGGA
TGATAAAGGAGTGAACAAGA

Downstream 100 bases:

>100_bases
CTGCGATACTGTTTTTAAATAAAACAATATATAGGGGGAGTTTTGGATGAAAAAAGCAAAAAAGGGCATCGTTTTATCAT
CAATTCTCGCAATCTCAATG

Product: ribose ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MEIQKVVELPVKGKMRKGMNTNALQQLLAFASLIVLVVIFSIASANFLQFDNIIGIFLSTAVTGILALGATMIIVTSGID
LSCGTVLTLSSVMTGVFAVNLGLPVWVAVLGGILIGAVVGLISGAAIAKLKIPPFIATLAMMMIAKGLALVISKATPIYF
TSIPSFNKIAMGSIIPGFAIPNAVFIFFGMAIFASLILNKTIIGRYTFALGSNEEATRLSGVNVDKWKIIIYMLAGVFTG
VAGIIMASRLNSAQPALGAGYELEAIAAVVIGGTSLSGGKGTILGTVIGALIMSVLTNGLQILSVPQEWQTVVVGAVILL
AVYADVLRNKKAKN

Sequences:

>Translated_334_residues
MEIQKVVELPVKGKMRKGMNTNALQQLLAFASLIVLVVIFSIASANFLQFDNIIGIFLSTAVTGILALGATMIIVTSGID
LSCGTVLTLSSVMTGVFAVNLGLPVWVAVLGGILIGAVVGLISGAAIAKLKIPPFIATLAMMMIAKGLALVISKATPIYF
TSIPSFNKIAMGSIIPGFAIPNAVFIFFGMAIFASLILNKTIIGRYTFALGSNEEATRLSGVNVDKWKIIIYMLAGVFTG
VAGIIMASRLNSAQPALGAGYELEAIAAVVIGGTSLSGGKGTILGTVIGALIMSVLTNGLQILSVPQEWQTVVVGAVILL
AVYADVLRNKKAKN
>Mature_334_residues
MEIQKVVELPVKGKMRKGMNTNALQQLLAFASLIVLVVIFSIASANFLQFDNIIGIFLSTAVTGILALGATMIIVTSGID
LSCGTVLTLSSVMTGVFAVNLGLPVWVAVLGGILIGAVVGLISGAAIAKLKIPPFIATLAMMMIAKGLALVISKATPIYF
TSIPSFNKIAMGSIIPGFAIPNAVFIFFGMAIFASLILNKTIIGRYTFALGSNEEATRLSGVNVDKWKIIIYMLAGVFTG
VAGIIMASRLNSAQPALGAGYELEAIAAVVIGGTSLSGGKGTILGTVIGALIMSVLTNGLQILSVPQEWQTVVVGAVILL
AVYADVLRNKKAKN

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=316, Percent_Identity=42.7215189873418, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI145693152, Length=308, Percent_Identity=38.961038961039, Blast_Score=164, Evalue=1e-41,
Organism=Escherichia coli, GI1790524, Length=302, Percent_Identity=36.7549668874172, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1788896, Length=304, Percent_Identity=33.8815789473684, Blast_Score=148, Evalue=6e-37,
Organism=Escherichia coli, GI1789992, Length=134, Percent_Identity=45.5223880597015, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1788471, Length=291, Percent_Identity=38.4879725085911, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI87082395, Length=261, Percent_Identity=32.183908045977, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI145693214, Length=261, Percent_Identity=35.632183908046, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787794, Length=307, Percent_Identity=30.2931596091205, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787793, Length=290, Percent_Identity=30, Blast_Score=99, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34660; Mature: 34660

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIQKVVELPVKGKMRKGMNTNALQQLLAFASLIVLVVIFSIASANFLQFDNIIGIFLST
CCHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
AVTGILALGATMIIVTSGIDLSCGTVLTLSSVMTGVFAVNLGLPVWVAVLGGILIGAVVG
HHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LISGAAIAKLKIPPFIATLAMMMIAKGLALVISKATPIYFTSIPSFNKIAMGSIIPGFAI
HHCCCHHEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCHHH
PNAVFIFFGMAIFASLILNKTIIGRYTFALGSNEEATRLSGVNVDKWKIIIYMLAGVFTG
HHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHCCCCCHHHHHHHHHHHHHHHH
VAGIIMASRLNSAQPALGAGYELEAIAAVVIGGTSLSGGKGTILGTVIGALIMSVLTNGL
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC
QILSVPQEWQTVVVGAVILLAVYADVLRNKKAKN
EEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MEIQKVVELPVKGKMRKGMNTNALQQLLAFASLIVLVVIFSIASANFLQFDNIIGIFLST
CCHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
AVTGILALGATMIIVTSGIDLSCGTVLTLSSVMTGVFAVNLGLPVWVAVLGGILIGAVVG
HHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LISGAAIAKLKIPPFIATLAMMMIAKGLALVISKATPIYFTSIPSFNKIAMGSIIPGFAI
HHCCCHHEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCHHH
PNAVFIFFGMAIFASLILNKTIIGRYTFALGSNEEATRLSGVNVDKWKIIIYMLAGVFTG
HHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHCCCCCHHHHHHHHHHHHHHHH
VAGIIMASRLNSAQPALGAGYELEAIAAVVIGGTSLSGGKGTILGTVIGALIMSVLTNGL
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC
QILSVPQEWQTVVVGAVILLAVYADVLRNKKAKN
EEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]