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The map label for this gene is rbsB [H]

Identifier: 222096660

GI number: 222096660

Start: 2949251

End: 2950246

Strand: Reverse

Name: rbsB [H]

Synonym: BCQ_3000

Alternate gene names: 222096660

Gene position: 2950246-2949251 (Counterclockwise)

Preceding gene: 222096661

Following gene: 222096659

Centisome position: 56.58

GC content: 39.86

Gene sequence:

>996_bases
ATGAAAAAAGCAAAAAAGGGCATCGTTTTATCATCAATTCTCGCAATCTCAATGTTTATGGGAGCGTGTTCTTCAAATAA
TGCAAGCACGGGAAGTAAGGATAGTGATGCTCCTGCAAAAGATGACGGCAAGCGCTATGTTGCGATTATTTCAAAAGGTT
TCCAGCATCAGTTTTGGCAGGCAGTTAAAAAAGGGGCTGAGCAAGCAGCAGATGAGTATAAGGTGAATATTACATTTGTA
GGTCCTGAAACGGAAGCGCAGGTGGATAAACAAGTTGAAATGCTCCGTAGCACACTTGATAAAAAACCAGATGCGATTGG
GTTTGCGGCATTAGACTCTAAGGCAGCTCTTCCTTTATTAGAACAAGCAAAAAACAAAAAGATTCCGGTTGTTGCATTTG
ACTCAGGTGTTGAGGGAGATATACCTGTTGCAACAGCAGCAACAGATAATAAAGCGGCAGCAGCTCTTGCAGCTGAGAAA
ATGGCTGGATTAATTGGTGAAAAAGGAGAAGTAGCAGTAGTTGCTCACGACCAGACAAGTAAAACAGGTGTTGAACGCCG
AGATGGCTTTGTAAATACAATCAAATCAAAGTATCCGAACATCAAACTTGTCGATATTCAATATGGTAGCGGCGATCAAT
TAAAATCGACTGACGCTGCTAAGGCAATTATGCAAGCGCACCCAAATGTAAAAGGTATTTTCGGTACAAATGAAGGTTCT
GCGATAGGGGTAGTAAATGCTGTTAAAGAATTGAACAAAAAGAGTGTAGTAGTAGTTGGCTTTGACTCTGGAAAACTACA
AATTGATGCGATTAAGAGCGGAGTAATGGCAGGTGCGATTACGCAAAATCCAATTGGAATTGGTTATGAAACTGTTAAAG
CAGCTGTTGAGAACCTAGATGGGAAACAAGTATCCAAAACAATTGACACTGGTTTCTATTGGTACGATAAAAAGAACATT
GATGATCCAAAAATTAAGGAAGTTCTATATCAATAA

Upstream 100 bases:

>100_bases
ATCTTATTGGCAGTTTACGCAGATGTGTTACGAAACAAAAAAGCAAAGAATTAACTGCGATACTGTTTTTAAATAAAACA
ATATATAGGGGGAGTTTTGG

Downstream 100 bases:

>100_bases
AATTTAAAGCGAAACTAGCGGTGCAAATAAGAGAGAAACTGAGGTGCATACTATTGTCGAGTGTAATAAATGATTTGAAA
GTATATGCAAATAAGATTGT

Product: ribose ABC transporter (ribose-binding protein)

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: ALBP [H]

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MKKAKKGIVLSSILAISMFMGACSSNNASTGSKDSDAPAKDDGKRYVAIISKGFQHQFWQAVKKGAEQAADEYKVNITFV
GPETEAQVDKQVEMLRSTLDKKPDAIGFAALDSKAALPLLEQAKNKKIPVVAFDSGVEGDIPVATAATDNKAAAALAAEK
MAGLIGEKGEVAVVAHDQTSKTGVERRDGFVNTIKSKYPNIKLVDIQYGSGDQLKSTDAAKAIMQAHPNVKGIFGTNEGS
AIGVVNAVKELNKKSVVVVGFDSGKLQIDAIKSGVMAGAITQNPIGIGYETVKAAVENLDGKQVSKTIDTGFYWYDKKNI
DDPKIKEVLYQ

Sequences:

>Translated_331_residues
MKKAKKGIVLSSILAISMFMGACSSNNASTGSKDSDAPAKDDGKRYVAIISKGFQHQFWQAVKKGAEQAADEYKVNITFV
GPETEAQVDKQVEMLRSTLDKKPDAIGFAALDSKAALPLLEQAKNKKIPVVAFDSGVEGDIPVATAATDNKAAAALAAEK
MAGLIGEKGEVAVVAHDQTSKTGVERRDGFVNTIKSKYPNIKLVDIQYGSGDQLKSTDAAKAIMQAHPNVKGIFGTNEGS
AIGVVNAVKELNKKSVVVVGFDSGKLQIDAIKSGVMAGAITQNPIGIGYETVKAAVENLDGKQVSKTIDTGFYWYDKKNI
DDPKIKEVLYQ
>Mature_331_residues
MKKAKKGIVLSSILAISMFMGACSSNNASTGSKDSDAPAKDDGKRYVAIISKGFQHQFWQAVKKGAEQAADEYKVNITFV
GPETEAQVDKQVEMLRSTLDKKPDAIGFAALDSKAALPLLEQAKNKKIPVVAFDSGVEGDIPVATAATDNKAAAALAAEK
MAGLIGEKGEVAVVAHDQTSKTGVERRDGFVNTIKSKYPNIKLVDIQYGSGDQLKSTDAAKAIMQAHPNVKGIFGTNEGS
AIGVVNAVKELNKKSVVVVGFDSGKLQIDAIKSGVMAGAITQNPIGIGYETVKAAVENLDGKQVSKTIDTGFYWYDKKNI
DDPKIKEVLYQ

Specific function: Part of the binding-protein-dependent transport system AlsBAC for D-allose [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790526, Length=260, Percent_Identity=30, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1790192, Length=278, Percent_Identity=24.8201438848921, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787795, Length=236, Percent_Identity=24.1525423728814, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 35156; Mature: 35156

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKAKKGIVLSSILAISMFMGACSSNNASTGSKDSDAPAKDDGKRYVAIISKGFQHQFWQ
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHCHHHHHHH
AVKKGAEQAADEYKVNITFVGPETEAQVDKQVEMLRSTLDKKPDAIGFAALDSKAALPLL
HHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH
EQAKNKKIPVVAFDSGVEGDIPVATAATDNKAAAALAAEKMAGLIGEKGEVAVVAHDQTS
HHHCCCCCCEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
KTGVERRDGFVNTIKSKYPNIKLVDIQYGSGDQLKSTDAAKAIMQAHPNVKGIFGTNEGS
CCCCHHHCCHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC
AIGVVNAVKELNKKSVVVVGFDSGKLQIDAIKSGVMAGAITQNPIGIGYETVKAAVENLD
EEHHHHHHHHCCCCEEEEEEECCCCEEEEEHHCCHHCCCEECCCCCCCHHHHHHHHHCCC
GKQVSKTIDTGFYWYDKKNIDDPKIKEVLYQ
CHHHHHHHCCCEEEEECCCCCCHHHHHHHCC
>Mature Secondary Structure
MKKAKKGIVLSSILAISMFMGACSSNNASTGSKDSDAPAKDDGKRYVAIISKGFQHQFWQ
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHCHHHHHHH
AVKKGAEQAADEYKVNITFVGPETEAQVDKQVEMLRSTLDKKPDAIGFAALDSKAALPLL
HHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH
EQAKNKKIPVVAFDSGVEGDIPVATAATDNKAAAALAAEKMAGLIGEKGEVAVVAHDQTS
HHHCCCCCCEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
KTGVERRDGFVNTIKSKYPNIKLVDIQYGSGDQLKSTDAAKAIMQAHPNVKGIFGTNEGS
CCCCHHHCCHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC
AIGVVNAVKELNKKSVVVVGFDSGKLQIDAIKSGVMAGAITQNPIGIGYETVKAAVENLD
EEHHHHHHHHCCCCEEEEEEECCCCEEEEEHHCCHHCCCEECCCCCCCHHHHHHHHHCCC
GKQVSKTIDTGFYWYDKKNIDDPKIKEVLYQ
CHHHHHHHCCCEEEEECCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 8576032; 9401019; 10064713 [H]