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The map label for this gene is lsrC [H]

Identifier: 222096458

GI number: 222096458

Start: 2732677

End: 2733630

Strand: Reverse

Name: lsrC [H]

Synonym: BCQ_2798

Alternate gene names: 222096458

Gene position: 2733630-2732677 (Counterclockwise)

Preceding gene: 222096459

Following gene: 222096457

Centisome position: 52.43

GC content: 35.64

Gene sequence:

>954_bases
ATGAAACGTATGTTAAAAATGCATGAAACGTCTATCATACTGTTACTACTAATTTATATAGCTATTGTAGGAATGATAAA
TCCTAGTTTTATCCAATTTAACTCGTTATCTTTAATGGTGAAATCAAGCGTTATTTTAGTCGTGTTAGCAATTGGCCAGT
CGTTCGTCTTATTTACGAAAAATATAGATGTATCAGTTGGTTCAAGCATGGGGTTAAGTGCAGCAGTTTGCGGAATGTTG
TTAAATGATGGATATCATGCATCTCTGTCCATACTTGCTGCTATTATACTTGGCGCTATTCTCGGTTTTATAAATGGAAT
TGGTGTTGCAAAATTTCGGGTACCGGCCATTATTATGACATTAGGCATGTTAGGAATTATTAGGGGTGCCATGTTAATTT
TTACAGGCGGGAAGTGGATTGAAGATATTCCAAACGATTTTAAGCAGCTGTCATCTATCGTCATTTTTGGTTTACCTATA
ACTGTATGGTTCGTTCTTATTATTTTACTACTACTATACTTCTTTTTAAGGAAGGTGCCATTTGGAAGATACTTTTATGC
GGTAGGTGATAATGAAGATGGCGCGAGACTTATTGGTATACCTATTAATAAAGTGAAAATATGTGCGTTTATGATTTCAG
GCATAAGTGCTGCGCTCGCTGGTTGCATATTTGTTATGAATATCGGATTCGTTCCTAATCAAACAGGAACTGGGATAGAA
CTACAGGTTATCGCAGCTGCTGTACTAGGGGGAGTTCATTTAAAAGGAGGAACAGGATCTTTATTTGGAGCTGCATTAGG
AGCATTCTTTTTAGAAACAATAAGCAGTTCACTCGTCTTTCTAAAAATACCAGCATTTTGGAATAATGCTATTTCAGGTT
TTTTATTATTACTTATCATCATACTGGATAGTGTTATGAAAAAGTGGAAGGCAGAAAGGAGGATGAATCTATGA

Upstream 100 bases:

>100_bases
GTGTATATGTAATGAGAAATGGACGATTTGTTTCTCATATGGAAAAAGAACAACTGAGTGTGAATGAAGTTACACGCCTT
GCATACGGAGGTGTAGCGGA

Downstream 100 bases:

>100_bases
AGTATGTATACAGATGGGAAGGTGTTCTAATTGTATTGCTTCTTATAGAATTCATTCTCTTTAGTTTAATCAATAGTGAT
TTCTTAAATATTAGTAATCT

Product: sugar ABC transporter permease

Products: NA

Alternate protein names: AI-2 import system permease protein lsrC [H]

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MKRMLKMHETSIILLLLIYIAIVGMINPSFIQFNSLSLMVKSSVILVVLAIGQSFVLFTKNIDVSVGSSMGLSAAVCGML
LNDGYHASLSILAAIILGAILGFINGIGVAKFRVPAIIMTLGMLGIIRGAMLIFTGGKWIEDIPNDFKQLSSIVIFGLPI
TVWFVLIILLLLYFFLRKVPFGRYFYAVGDNEDGARLIGIPINKVKICAFMISGISAALAGCIFVMNIGFVPNQTGTGIE
LQVIAAAVLGGVHLKGGTGSLFGAALGAFFLETISSSLVFLKIPAFWNNAISGFLLLLIIILDSVMKKWKAERRMNL

Sequences:

>Translated_317_residues
MKRMLKMHETSIILLLLIYIAIVGMINPSFIQFNSLSLMVKSSVILVVLAIGQSFVLFTKNIDVSVGSSMGLSAAVCGML
LNDGYHASLSILAAIILGAILGFINGIGVAKFRVPAIIMTLGMLGIIRGAMLIFTGGKWIEDIPNDFKQLSSIVIFGLPI
TVWFVLIILLLLYFFLRKVPFGRYFYAVGDNEDGARLIGIPINKVKICAFMISGISAALAGCIFVMNIGFVPNQTGTGIE
LQVIAAAVLGGVHLKGGTGSLFGAALGAFFLETISSSLVFLKIPAFWNNAISGFLLLLIIILDSVMKKWKAERRMNL
>Mature_317_residues
MKRMLKMHETSIILLLLIYIAIVGMINPSFIQFNSLSLMVKSSVILVVLAIGQSFVLFTKNIDVSVGSSMGLSAAVCGML
LNDGYHASLSILAAIILGAILGFINGIGVAKFRVPAIIMTLGMLGIIRGAMLIFTGGKWIEDIPNDFKQLSSIVIFGLPI
TVWFVLIILLLLYFFLRKVPFGRYFYAVGDNEDGARLIGIPINKVKICAFMISGISAALAGCIFVMNIGFVPNQTGTGIE
LQVIAAAVLGGVHLKGGTGSLFGAALGAFFLETISSSLVFLKIPAFWNNAISGFLLLLIIILDSVMKKWKAERRMNL

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787793, Length=284, Percent_Identity=46.4788732394366, Blast_Score=247, Evalue=7e-67,
Organism=Escherichia coli, GI1790191, Length=305, Percent_Identity=34.0983606557377, Blast_Score=151, Evalue=6e-38,
Organism=Escherichia coli, GI145693152, Length=282, Percent_Identity=32.9787234042553, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1788896, Length=317, Percent_Identity=29.0220820189274, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1790524, Length=297, Percent_Identity=29.96632996633, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787794, Length=320, Percent_Identity=29.0625, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1789992, Length=135, Percent_Identity=37.7777777777778, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1788471, Length=323, Percent_Identity=27.2445820433437, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87082395, Length=297, Percent_Identity=26.5993265993266, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI145693214, Length=258, Percent_Identity=28.2945736434109, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34156; Mature: 34156

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRMLKMHETSIILLLLIYIAIVGMINPSFIQFNSLSLMVKSSVILVVLAIGQSFVLFTK
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHCCEEEEEEE
NIDVSVGSSMGLSAAVCGMLLNDGYHASLSILAAIILGAILGFINGIGVAKFRVPAIIMT
CCCEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LGMLGIIRGAMLIFTGGKWIEDIPNDFKQLSSIVIFGLPITVWFVLIILLLLYFFLRKVP
HHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FGRYFYAVGDNEDGARLIGIPINKVKICAFMISGISAALAGCIFVMNIGFVPNQTGTGIE
CCCEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
LQVIAAAVLGGVHLKGGTGSLFGAALGAFFLETISSSLVFLKIPAFWNNAISGFLLLLII
HHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHH
ILDSVMKKWKAERRMNL
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKRMLKMHETSIILLLLIYIAIVGMINPSFIQFNSLSLMVKSSVILVVLAIGQSFVLFTK
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHCCEEEEEEE
NIDVSVGSSMGLSAAVCGMLLNDGYHASLSILAAIILGAILGFINGIGVAKFRVPAIIMT
CCCEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LGMLGIIRGAMLIFTGGKWIEDIPNDFKQLSSIVIFGLPITVWFVLIILLLLYFFLRKVP
HHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FGRYFYAVGDNEDGARLIGIPINKVKICAFMISGISAALAGCIFVMNIGFVPNQTGTGIE
CCCEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
LQVIAAAVLGGVHLKGGTGSLFGAALGAFFLETISSSLVFLKIPAFWNNAISGFLLLLII
HHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHH
ILDSVMKKWKAERRMNL
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14528314 [H]