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The map label for this gene is lsrD [H]

Identifier: 222096457

GI number: 222096457

Start: 2731691

End: 2732680

Strand: Reverse

Name: lsrD [H]

Synonym: BCQ_2797

Alternate gene names: 222096457

Gene position: 2732680-2731691 (Counterclockwise)

Preceding gene: 222096458

Following gene: 222096456

Centisome position: 52.41

GC content: 37.37

Gene sequence:

>990_bases
ATGAAGTATGTATACAGATGGGAAGGTGTTCTAATTGTATTGCTTCTTATAGAATTCATTCTCTTTAGTTTAATCAATAG
TGATTTCTTAAATATTAGTAATCTCCTTTTTAGTACAAATGATTTCCTATTTATCGCAATTGCGGCGATACCAATGACTT
TCGTTATAGTAACAGGAGGAATTGATGTATCGGTCGGCTCAATAATGGGTCTCACTTCGATCTTGATCGGTGTACTTTGG
ATGAACGGAATATCTATTTTGTTTGCTGTCATAATCGTCCTAATAATTAGTTGTTTAGCAGGCGCTATAAACGGACTCAT
TATAAAAATGACAGATGTAGAACCACTCGTCGTTACACTCGGAACGATGTTTTTATACGGAGGAATTGCACTCGTCATTT
CAGGAGGAGCAGGTGCTTCTGGGTACGAAGGAATAAGCGGTTTACCTGACACATTTGTACAACTGGCAAACGGTAGTTTT
ATAGGAATACCGAATTTATTATGGCTACTGATCGTATTAACAGTTTTATTTACTGTATTATTTCACCGAACTATATACGG
GCGCCATGTAAAATTAACAGGTGCGAACGAGAATACAGCAAAATACACCGGGATTAAAACGAAAAAAGTAGTCATTATCG
CTTACATACTTTCCGGGTTAGGAGGTGGATTAGGAGGTGCTTTCTTAACCGCATATTTTGGTTCCGCACGTGCTGATATG
GGAAGTGAAACAATTTTACCAATCATTACAGCAGTCGTATTAGGCGGGACACTTATTACAGGGGGAAAAGGAAGCATTAT
CGGTACTGTACTAGCGAGTATTTTTATTGGGCTCATGCAGTATGGTTTGCAAATGACGGGTTTAACAAATGAACAATCCA
ACGTAGTAATTGGTATGATTCTTATTCTTTCAGTTATTATGAGACATTTCAAATTACATCAATTCACACTGGGGAAAAGA
AAGAATTTGCATAAGGGGGAAATGTCATGA

Upstream 100 bases:

>100_bases
CAGCATTTTGGAATAATGCTATTTCAGGTTTTTTATTATTACTTATCATCATACTGGATAGTGTTATGAAAAAGTGGAAG
GCAGAAAGGAGGATGAATCT

Downstream 100 bases:

>100_bases
AGAGAAAACTAGGGATTGTATTCATTGTATGTATTTGTTTAATCGGTTTAATCGCTTGTTCTAGTCAAACCACAGATAAG
AAAAAAGCTGATGATGTGAA

Product: sugar ABC transporter permease

Products: NA

Alternate protein names: AI-2 import system permease protein lsrD [H]

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MKYVYRWEGVLIVLLLIEFILFSLINSDFLNISNLLFSTNDFLFIAIAAIPMTFVIVTGGIDVSVGSIMGLTSILIGVLW
MNGISILFAVIIVLIISCLAGAINGLIIKMTDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDTFVQLANGSF
IGIPNLLWLLIVLTVLFTVLFHRTIYGRHVKLTGANENTAKYTGIKTKKVVIIAYILSGLGGGLGGAFLTAYFGSARADM
GSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNEQSNVVIGMILILSVIMRHFKLHQFTLGKR
KNLHKGEMS

Sequences:

>Translated_329_residues
MKYVYRWEGVLIVLLLIEFILFSLINSDFLNISNLLFSTNDFLFIAIAAIPMTFVIVTGGIDVSVGSIMGLTSILIGVLW
MNGISILFAVIIVLIISCLAGAINGLIIKMTDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDTFVQLANGSF
IGIPNLLWLLIVLTVLFTVLFHRTIYGRHVKLTGANENTAKYTGIKTKKVVIIAYILSGLGGGLGGAFLTAYFGSARADM
GSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNEQSNVVIGMILILSVIMRHFKLHQFTLGKR
KNLHKGEMS
>Mature_329_residues
MKYVYRWEGVLIVLLLIEFILFSLINSDFLNISNLLFSTNDFLFIAIAAIPMTFVIVTGGIDVSVGSIMGLTSILIGVLW
MNGISILFAVIIVLIISCLAGAINGLIIKMTDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDTFVQLANGSF
IGIPNLLWLLIVLTVLFTVLFHRTIYGRHVKLTGANENTAKYTGIKTKKVVIIAYILSGLGGGLGGAFLTAYFGSARADM
GSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNEQSNVVIGMILILSVIMRHFKLHQFTLGKR
KNLHKGEMS

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787794, Length=326, Percent_Identity=43.2515337423313, Blast_Score=246, Evalue=1e-66,
Organism=Escherichia coli, GI1790191, Length=304, Percent_Identity=30.9210526315789, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788896, Length=310, Percent_Identity=30.6451612903226, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1790524, Length=259, Percent_Identity=33.2046332046332, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87082395, Length=280, Percent_Identity=31.7857142857143, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787793, Length=303, Percent_Identity=30.03300330033, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI145693152, Length=265, Percent_Identity=29.4339622641509, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI145693214, Length=284, Percent_Identity=28.5211267605634, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1788471, Length=274, Percent_Identity=30.2919708029197, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1789992, Length=334, Percent_Identity=26.0479041916168, Blast_Score=72, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35013; Mature: 35013

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYVYRWEGVLIVLLLIEFILFSLINSDFLNISNLLFSTNDFLFIAIAAIPMTFVIVTGG
CCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHEEEEEECC
IDVSVGSIMGLTSILIGVLWMNGISILFAVIIVLIISCLAGAINGLIIKMTDVEPLVVTL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHH
GTMFLYGGIALVISGGAGASGYEGISGLPDTFVQLANGSFIGIPNLLWLLIVLTVLFTVL
HHHHHHCCHHEEEECCCCCCCCCCCCCCCHHHHHHHCCCEECHHHHHHHHHHHHHHHHHH
FHRTIYGRHVKLTGANENTAKYTGIKTKKVVIIAYILSGLGGGLGGAFLTAYFGSARADM
HHHHHHCCEEEEECCCCCCCEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHCCC
GSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNEQSNVVIGMI
CCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCEECCCCCCCCCHHHHHH
LILSVIMRHFKLHQFTLGKRKNLHKGEMS
HHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKYVYRWEGVLIVLLLIEFILFSLINSDFLNISNLLFSTNDFLFIAIAAIPMTFVIVTGG
CCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHEEEEEECC
IDVSVGSIMGLTSILIGVLWMNGISILFAVIIVLIISCLAGAINGLIIKMTDVEPLVVTL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHH
GTMFLYGGIALVISGGAGASGYEGISGLPDTFVQLANGSFIGIPNLLWLLIVLTVLFTVL
HHHHHHCCHHEEEECCCCCCCCCCCCCCCHHHHHHHCCCEECHHHHHHHHHHHHHHHHHH
FHRTIYGRHVKLTGANENTAKYTGIKTKKVVIIAYILSGLGGGLGGAFLTAYFGSARADM
HHHHHHCCEEEEECCCCCCCEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHCCC
GSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNEQSNVVIGMI
CCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCEECCCCCCCCCHHHHHH
LILSVIMRHFKLHQFTLGKRKNLHKGEMS
HHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA