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The map label for this gene is lsrB [H]

Identifier: 222096456

GI number: 222096456

Start: 2730651

End: 2731523

Strand: Reverse

Name: lsrB [H]

Synonym: BCQ_2796

Alternate gene names: 222096456

Gene position: 2731523-2730651 (Counterclockwise)

Preceding gene: 222096457

Following gene: 222096454

Centisome position: 52.39

GC content: 37.34

Gene sequence:

>873_bases
ATGGGGGATAAACTAGGCGTACAAGTGAAATATGATGGACCGTCTGAAGCAAGCGTATCAGGGCAAGTAAAGTATATAAA
TAATTTTATTAACCAAAACTATGATGCACTTATGGTCTCTTCTACATCAGTAGATGGTTTATCACAATCACTGCAACGTG
CTAAGAAAAAAGGAATGACTGTCTTAACGTGGGATTCTGATGTGAATCCGAAAGACCGTTCCTTTTATATCAGCCAAGGA
ACACCAGACCAACTTGCTAATTTATTAATAGAAATGACCTCAAAGCAAATTGGAGATAAAGGAAAAGTAGCATTCTTTTA
TTCTAGCCCGACAGTAACGGATCAAAACCAATGGGTAACGAAAGCGAAAGAAATTATTAAAAAGAAATATCCGAACTGGG
AAATTGTAACGACGCAGTACGGTGAAAATAATGCGCAAAAGTCTTTGTCAGTAGGAGAGAATATTTTAAAAACGTATCCT
GATATTAATGCAGTCATTTGTCCAGATGCAACGGCACTTCCGGCAATGGCACAAGCAGCTGAAAATTTAAAAATGGATAA
AAAGGTTGTCGTAACGGGCTTCTCTACACCAAACGTTATGCGTGATTACGTAAAACGAGGAACAGTAGCACAATTTGGTT
TATGGGATGTAAAACAACAAGGTGCACTCGCAACGTATGTTGCAAATGAAATTGTTGTAAAAGGGAAGAAGTTAAAAGTG
GGGGATAGCTTCGAAGTAAAAGGAATTGGAAAAGTAAAAGTAGAGCCAAACTCCATTCAAGGATATGACTATGAGGCAGA
AGGGAACGGAATTATCGTACTACCAGAACGAGTCGTATTTACAAAGGATAATATTGAAAAATATAATTTCTAG

Upstream 100 bases:

>100_bases
AACCACAGATAAGAAAAAAGCTGATGATGTGAAATTTGCATTTATCCCAAAATTAACTGGAGTTGGCTTCTTTACATCAG
GTGGTGAAGGAGCAAAAGAG

Downstream 100 bases:

>100_bases
TAACGAAAAAACGTCCGAATGTATCGGACGTTTTTATTTCTTCATTAATTATGAACTGTTTCTTTTTCATTTAATCCAAG
GGTACGACCTGTAGAAGTGT

Product: sugar ABC transporter substrate-binding protein

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MGDKLGVQVKYDGPSEASVSGQVKYINNFINQNYDALMVSSTSVDGLSQSLQRAKKKGMTVLTWDSDVNPKDRSFYISQG
TPDQLANLLIEMTSKQIGDKGKVAFFYSSPTVTDQNQWVTKAKEIIKKKYPNWEIVTTQYGENNAQKSLSVGENILKTYP
DINAVICPDATALPAMAQAAENLKMDKKVVVTGFSTPNVMRDYVKRGTVAQFGLWDVKQQGALATYVANEIVVKGKKLKV
GDSFEVKGIGKVKVEPNSIQGYDYEAEGNGIIVLPERVVFTKDNIEKYNF

Sequences:

>Translated_290_residues
MGDKLGVQVKYDGPSEASVSGQVKYINNFINQNYDALMVSSTSVDGLSQSLQRAKKKGMTVLTWDSDVNPKDRSFYISQG
TPDQLANLLIEMTSKQIGDKGKVAFFYSSPTVTDQNQWVTKAKEIIKKKYPNWEIVTTQYGENNAQKSLSVGENILKTYP
DINAVICPDATALPAMAQAAENLKMDKKVVVTGFSTPNVMRDYVKRGTVAQFGLWDVKQQGALATYVANEIVVKGKKLKV
GDSFEVKGIGKVKVEPNSIQGYDYEAEGNGIIVLPERVVFTKDNIEKYNF
>Mature_289_residues
GDKLGVQVKYDGPSEASVSGQVKYINNFINQNYDALMVSSTSVDGLSQSLQRAKKKGMTVLTWDSDVNPKDRSFYISQGT
PDQLANLLIEMTSKQIGDKGKVAFFYSSPTVTDQNQWVTKAKEIIKKKYPNWEIVTTQYGENNAQKSLSVGENILKTYPD
INAVICPDATALPAMAQAAENLKMDKKVVVTGFSTPNVMRDYVKRGTVAQFGLWDVKQQGALATYVANEIVVKGKKLKVG
DSFEVKGIGKVKVEPNSIQGYDYEAEGNGIIVLPERVVFTKDNIEKYNF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=290, Percent_Identity=62.7586206896552, Blast_Score=365, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32065; Mature: 31934

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDKLGVQVKYDGPSEASVSGQVKYINNFINQNYDALMVSSTSVDGLSQSLQRAKKKGMT
CCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCE
VLTWDSDVNPKDRSFYISQGTPDQLANLLIEMTSKQIGDKGKVAFFYSSPTVTDQNQWVT
EEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHH
KAKEIIKKKYPNWEIVTTQYGENNAQKSLSVGENILKTYPDINAVICPDATALPAMAQAA
HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHH
ENLKMDKKVVVTGFSTPNVMRDYVKRGTVAQFGLWDVKQQGALATYVANEIVVKGKKLKV
HHCCCCCEEEEEECCCHHHHHHHHHCCCEEECCCCCCCCCCCEEEEECCEEEEECCEEEC
GDSFEVKGIGKVKVEPNSIQGYDYEAEGNGIIVLPERVVFTKDNIEKYNF
CCCEEECCCEEEEECCCCCCCCEEEECCCEEEEECCEEEEECCCCCCCCC
>Mature Secondary Structure 
GDKLGVQVKYDGPSEASVSGQVKYINNFINQNYDALMVSSTSVDGLSQSLQRAKKKGMT
CCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCE
VLTWDSDVNPKDRSFYISQGTPDQLANLLIEMTSKQIGDKGKVAFFYSSPTVTDQNQWVT
EEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHH
KAKEIIKKKYPNWEIVTTQYGENNAQKSLSVGENILKTYPDINAVICPDATALPAMAQAA
HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHH
ENLKMDKKVVVTGFSTPNVMRDYVKRGTVAQFGLWDVKQQGALATYVANEIVVKGKKLKV
HHCCCCCEEEEEECCCHHHHHHHHHCCCEEECCCCCCCCCCCEEEEECCEEEEECCEEEC
GDSFEVKGIGKVKVEPNSIQGYDYEAEGNGIIVLPERVVFTKDNIEKYNF
CCCEEECCCEEEEECCCCCCCCEEEECCCEEEEECCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA