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The map label for this gene is sigX

Identifier: 222096241

GI number: 222096241

Start: 2539356

End: 2539886

Strand: Reverse

Name: sigX

Synonym: BCQ_2581

Alternate gene names: NA

Gene position: 2539886-2539356 (Counterclockwise)

Preceding gene: 222096242

Following gene: 222096240

Centisome position: 48.71

GC content: 34.27

Gene sequence:

>531_bases
ATGCAAACAATAAAAAGTGGAGAGAGGAATGTTTCACATATAACATTTGAAGCGTTGTTTAAACAAAACTATGCGTATGT
TGTTAAACAAATAATATGGATCATTAAAGAACAGACGGTTGCTGAGGAATTAGCGCAAGAGGTGTTTTTGCAACTGTATC
ATTCAGATTGGAAAGCAATAGAAAATTTACGTGCTTGGCTTATAAAGTCTTCTACTTATGTCGCCTATAACTACATTCGC
TCTGAAAAGAGACATCGGGCAAGAATCGATAAAGAAACCCAGTATCAAGAAGTTCAAATTGATTCGTCACTAGATGATGA
ATGGATCAGAAAAGAAGAAATTACAAAAGTACAAAGGGTTTTGCGAAAAATGAAAGAACAAGATCGAACAATATTATTAA
TGAAATTTTCAGGGTTTCGATATAAAGAAATCGCGCAAGTACTTCAGATTGAAGATTCGTCTGTTGGAACATTGTTGGCA
CGAGCTAAACTTAAGTTCCGAAAAACTTTTGAACAAATGGAGGGGAAATAA

Upstream 100 bases:

>100_bases
CGTAATAGTACATAATAAAAATATTATTTTTTTGTCACAAAAATGAGCATTCTGGTTTCTCTATAATGCAGGCATCAAAA
GAGAGAGAGGTTTTATTCAC

Downstream 100 bases:

>100_bases
ATGACTTGTTATGAAATGGGATCCATTCAATCATATATTGATGGCGAACTTTCGCGTGAGGAAAGAAAACAATTTATAAA
GCATTTAGACAAATGTAAGA

Product: RNA polymerase sigma factor sigx

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor SigX; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MQTIKSGERNVSHITFEALFKQNYAYVVKQIIWIIKEQTVAEELAQEVFLQLYHSDWKAIENLRAWLIKSSTYVAYNYIR
SEKRHRARIDKETQYQEVQIDSSLDDEWIRKEEITKVQRVLRKMKEQDRTILLMKFSGFRYKEIAQVLQIEDSSVGTLLA
RAKLKFRKTFEQMEGK

Sequences:

>Translated_176_residues
MQTIKSGERNVSHITFEALFKQNYAYVVKQIIWIIKEQTVAEELAQEVFLQLYHSDWKAIENLRAWLIKSSTYVAYNYIR
SEKRHRARIDKETQYQEVQIDSSLDDEWIRKEEITKVQRVLRKMKEQDRTILLMKFSGFRYKEIAQVLQIEDSSVGTLLA
RAKLKFRKTFEQMEGK
>Mature_176_residues
MQTIKSGERNVSHITFEALFKQNYAYVVKQIIWIIKEQTVAEELAQEVFLQLYHSDWKAIENLRAWLIKSSTYVAYNYIR
SEKRHRARIDKETQYQEVQIDSSLDDEWIRKEEITKVQRVLRKMKEQDRTILLMKFSGFRYKEIAQVLQIEDSSVGTLLA
RAKLKFRKTFEQMEGK

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21116; Mature: 21116

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTIKSGERNVSHITFEALFKQNYAYVVKQIIWIIKEQTVAEELAQEVFLQLYHSDWKAI
CCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENLRAWLIKSSTYVAYNYIRSEKRHRARIDKETQYQEVQIDSSLDDEWIRKEEITKVQRV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCCCHHHHHHHHHHHHHHH
LRKMKEQDRTILLMKFSGFRYKEIAQVLQIEDSSVGTLLARAKLKFRKTFEQMEGK
HHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQTIKSGERNVSHITFEALFKQNYAYVVKQIIWIIKEQTVAEELAQEVFLQLYHSDWKAI
CCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENLRAWLIKSSTYVAYNYIRSEKRHRARIDKETQYQEVQIDSSLDDEWIRKEEITKVQRV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCCCHHHHHHHHHHHHHHH
LRKMKEQDRTILLMKFSGFRYKEIAQVLQIEDSSVGTLLARAKLKFRKTFEQMEGK
HHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA