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The map label for this gene is yvbU [H]

Identifier: 222095567

GI number: 222095567

Start: 1887684

End: 1888553

Strand: Direct

Name: yvbU [H]

Synonym: BCQ_1907

Alternate gene names: 222095567

Gene position: 1887684-1888553 (Clockwise)

Preceding gene: 222095565

Following gene: 222095568

Centisome position: 36.2

GC content: 36.9

Gene sequence:

>870_bases
ATGACCATTACACAACTTCAAGTGTTAATAAAAACTGTTGAGTTAGGTAGTTTTACGAAGGCAGCTCGGGTGTTAAATAT
GACGCAGCCGGCTGTAAGTCATGCCATTTCAAGTATTGAGTCAGAGTTAGGAGTTACGATTCTTATACGTGATAAACGAA
AAGGGTTAATTGTTACGGATGTAGGAAGCAGAATTCTTGTACATATTAGAGAGATTTTGAACGGTGTAGAGAAGATTGAA
CAAGAAGTTGCGATGGAGAAAGGACACGAAGTTGGGACGATTCGAATTGGGAGTTTTCCGAGTGCTTCTGCACATTTCTT
ACCGAAAATGATAAACCATTTTAAGGAGAAGTATCCGAACTTAGAAGTCGTTCTTTATGAAGGAACGATTAAAGAAGTTG
AAGATTGGTTAGTATCGAGGGTTGTTGATATAGGGATTGTTATTTTACCTAATAAAGAGATGGAGATTGTTCCATTAACG
AAGGGAAAAATGGTTGTTATTTTAAGAGAGGATCATCCTCTTTGCAAGAAGGACGCTATTACAATTCGTGATTTGGAGAA
TGAACCGATCATATTATGTAAGGGCGGATACGAACCACCTATTATCGATATGTTTAAACAAGTAAATGTACCACTTCGAG
CTGAGTATGTAATTTCGACAGTTACGACAGCTTTAAATATGATTCAAGAAGGGTTAGGTATTGCAATATTAGCTGAATTA
TCTTTAACGAATTTACCAAAAAATGTGCAAACGAGAGAATTGGAACCGCAAGTATGGAGAGAAATTGCTTTAGCTGTTCC
TTCACTAAAGGATTCTTCAATCGCTGTGCAGCTATTTATTGAAGAATTTCAGGCGCTATTTGCAGAATAA

Upstream 100 bases:

>100_bases
CACTGTAAGACCTCCTTGATGTTATTCATTTCACTATGATATGATATCGACTGTAATAAATAAAATGAATCTTTTTTATG
AGGAGTATAAGTGATTAGTT

Downstream 100 bases:

>100_bases
AAAGAGGTGTCTCGTATATTATAATGGGACACTTTTTAATTTATTTATAAAAAATATGTGAAAAGGATTGACTTATTTTT
TAGTTGTAACTATAATGATT

Product: transcriptional regulator, lysr family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MTITQLQVLIKTVELGSFTKAARVLNMTQPAVSHAISSIESELGVTILIRDKRKGLIVTDVGSRILVHIREILNGVEKIE
QEVAMEKGHEVGTIRIGSFPSASAHFLPKMINHFKEKYPNLEVVLYEGTIKEVEDWLVSRVVDIGIVILPNKEMEIVPLT
KGKMVVILREDHPLCKKDAITIRDLENEPIILCKGGYEPPIIDMFKQVNVPLRAEYVISTVTTALNMIQEGLGIAILAEL
SLTNLPKNVQTRELEPQVWREIALAVPSLKDSSIAVQLFIEEFQALFAE

Sequences:

>Translated_289_residues
MTITQLQVLIKTVELGSFTKAARVLNMTQPAVSHAISSIESELGVTILIRDKRKGLIVTDVGSRILVHIREILNGVEKIE
QEVAMEKGHEVGTIRIGSFPSASAHFLPKMINHFKEKYPNLEVVLYEGTIKEVEDWLVSRVVDIGIVILPNKEMEIVPLT
KGKMVVILREDHPLCKKDAITIRDLENEPIILCKGGYEPPIIDMFKQVNVPLRAEYVISTVTTALNMIQEGLGIAILAEL
SLTNLPKNVQTRELEPQVWREIALAVPSLKDSSIAVQLFIEEFQALFAE
>Mature_288_residues
TITQLQVLIKTVELGSFTKAARVLNMTQPAVSHAISSIESELGVTILIRDKRKGLIVTDVGSRILVHIREILNGVEKIEQ
EVAMEKGHEVGTIRIGSFPSASAHFLPKMINHFKEKYPNLEVVLYEGTIKEVEDWLVSRVVDIGIVILPNKEMEIVPLTK
GKMVVILREDHPLCKKDAITIRDLENEPIILCKGGYEPPIIDMFKQVNVPLRAEYVISTVTTALNMIQEGLGIAILAELS
LTNLPKNVQTRELEPQVWREIALAVPSLKDSSIAVQLFIEEFQALFAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=249, Percent_Identity=27.710843373494, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1790399, Length=248, Percent_Identity=28.2258064516129, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI157672245, Length=206, Percent_Identity=27.1844660194175, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1787530, Length=248, Percent_Identity=22.5806451612903, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788887, Length=275, Percent_Identity=26.9090909090909, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1788748, Length=245, Percent_Identity=23.6734693877551, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1787601, Length=175, Percent_Identity=26.8571428571429, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788481, Length=273, Percent_Identity=26.007326007326, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1786401, Length=208, Percent_Identity=29.8076923076923, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1787879, Length=245, Percent_Identity=23.6734693877551, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1788296, Length=246, Percent_Identity=25.2032520325203, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1789204, Length=290, Percent_Identity=23.448275862069, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788297, Length=254, Percent_Identity=24.8031496062992, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87081904, Length=205, Percent_Identity=25.8536585365854, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789506, Length=231, Percent_Identity=25.5411255411255, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790262, Length=277, Percent_Identity=22.7436823104693, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1789639, Length=126, Percent_Identity=30.952380952381, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789440, Length=133, Percent_Identity=36.0902255639098, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI2367136, Length=258, Percent_Identity=24.4186046511628, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1790208, Length=259, Percent_Identity=21.2355212355212, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32276; Mature: 32145

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTITQLQVLIKTVELGSFTKAARVLNMTQPAVSHAISSIESELGVTILIRDKRKGLIVTD
CCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEE
VGSRILVHIREILNGVEKIEQEVAMEKGHEVGTIRIGSFPSASAHFLPKMINHFKEKYPN
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC
LEVVLYEGTIKEVEDWLVSRVVDIGIVILPNKEMEIVPLTKGKMVVILREDHPLCKKDAI
EEEEEECCCHHHHHHHHHHHHHHCCEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCE
TIRDLENEPIILCKGGYEPPIIDMFKQVNVPLRAEYVISTVTTALNMIQEGLGIAILAEL
EEEECCCCCEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEH
SLTNLPKNVQTRELEPQVWREIALAVPSLKDSSIAVQLFIEEFQALFAE
HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TITQLQVLIKTVELGSFTKAARVLNMTQPAVSHAISSIESELGVTILIRDKRKGLIVTD
CHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEE
VGSRILVHIREILNGVEKIEQEVAMEKGHEVGTIRIGSFPSASAHFLPKMINHFKEKYPN
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC
LEVVLYEGTIKEVEDWLVSRVVDIGIVILPNKEMEIVPLTKGKMVVILREDHPLCKKDAI
EEEEEECCCHHHHHHHHHHHHHHCCEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCE
TIRDLENEPIILCKGGYEPPIIDMFKQVNVPLRAEYVISTVTTALNMIQEGLGIAILAEL
EEEECCCCCEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEH
SLTNLPKNVQTRELEPQVWREIALAVPSLKDSSIAVQLFIEEFQALFAE
HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]