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The map label for this gene is xyn11A [H]

Identifier: 222095505

GI number: 222095505

Start: 1820502

End: 1821206

Strand: Reverse

Name: xyn11A [H]

Synonym: BCQ_1845

Alternate gene names: 222095505

Gene position: 1821206-1820502 (Counterclockwise)

Preceding gene: 222095509

Following gene: 222095503

Centisome position: 34.93

GC content: 31.06

Gene sequence:

>705_bases
ATGAAGAAGAAAAAAATCATTACAATCGTTACAATATTCATTACTACTGTAGCATTATTCGGAACATACAAATTGATGAA
TGCAAGAAGCTTTCAATTATTTGGAGATTTAACAAATCGAGTAGAAACAAATGAAAAGGTGATTGCTTTAACTTTTGATG
ATGGCCCTACTAACAATGTAAAACAAATATTACCGCTACTAGATACATACAATGCAAAAGCTACTTTCTTTTTAATTGGA
AATGAATTAGAGAAAAACCTATCGTTAGGAAAATCTATCGTACAATCTGGACACCAAGTTGGAAACCATACATATTCTCA
TAACAGAATGGTTTTTAAAACACCTTCTTTTATTAAAGAAGAAATAGAAAAAACGAATGCATTAATCCGCCAAACAGGAT
TTACAGGCGCCATTGATTTTAGACCACCTAACGGGAAAAAGCTAATTGGTCTGCCCTATTATTTAAATAAAAACAATATC
GAAACAATCACCTGGGACCTTGAACCTGATACTTTTTATAAATCTGCTGCTGATAAAATTGAATATGTTAATAAAAATGT
AAAACCAGGTTCTATCATTTTACTGCACTCTATGTATGATGAGTCTAATGAAAGTTTACAGACCATTGAAGGTATTTTAG
ACTCTTTATCTAAGAAGGGCTATCAGTTCGTAACAGTAAACGAACTACAAAAAAGAACAAAGTAA

Upstream 100 bases:

>100_bases
AATTCCTTCCCCTTGCATCCACATCCTTTTTAAAGCATGAAATTACTTAGTTTGATATAATACTTTTTAGTCCAATCAAA
AACTATAGTGAGGTTGCGTT

Downstream 100 bases:

>100_bases
GAAAGGTAGCGTATCATACAATGATACGCTACCTTTTTGTTTAAATAATGCCAAGTACATTTAAGAATACGATAATAATC
GCAATTGGTGCGATAAAGCG

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Endo-1,4-beta-xylanase 11A; Xylanase xyn11A; Xylanase xynT; Acetylated xylan deacetylase [H]

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MKKKKIITIVTIFITTVALFGTYKLMNARSFQLFGDLTNRVETNEKVIALTFDDGPTNNVKQILPLLDTYNAKATFFLIG
NELEKNLSLGKSIVQSGHQVGNHTYSHNRMVFKTPSFIKEEIEKTNALIRQTGFTGAIDFRPPNGKKLIGLPYYLNKNNI
ETITWDLEPDTFYKSAADKIEYVNKNVKPGSIILLHSMYDESNESLQTIEGILDSLSKKGYQFVTVNELQKRTK

Sequences:

>Translated_234_residues
MKKKKIITIVTIFITTVALFGTYKLMNARSFQLFGDLTNRVETNEKVIALTFDDGPTNNVKQILPLLDTYNAKATFFLIG
NELEKNLSLGKSIVQSGHQVGNHTYSHNRMVFKTPSFIKEEIEKTNALIRQTGFTGAIDFRPPNGKKLIGLPYYLNKNNI
ETITWDLEPDTFYKSAADKIEYVNKNVKPGSIILLHSMYDESNESLQTIEGILDSLSKKGYQFVTVNELQKRTK
>Mature_234_residues
MKKKKIITIVTIFITTVALFGTYKLMNARSFQLFGDLTNRVETNEKVIALTFDDGPTNNVKQILPLLDTYNAKATFFLIG
NELEKNLSLGKSIVQSGHQVGNHTYSHNRMVFKTPSFIKEEIEKTNALIRQTGFTGAIDFRPPNGKKLIGLPYYLNKNNI
ETITWDLEPDTFYKSAADKIEYVNKNVKPGSIILLHSMYDESNESLQTIEGILDSLSKKGYQFVTVNELQKRTK

Specific function: Endo-acting xylanase which specifically cleaves internal linkages on the xylan backbone, releasing xylooligosaccharides. Is also probably able, via its C-terminal domain, to remove acetyl groups from acetylated xylan, and thus it is probably capable of hy

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 polysaccharide deacetylase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005084
- InterPro:   IPR008985
- InterPro:   IPR008979
- InterPro:   IPR011330
- InterPro:   IPR001137
- InterPro:   IPR013319
- InterPro:   IPR018208
- InterPro:   IPR002509 [H]

Pfam domain/function: PF03422 CBM_6; PF00457 Glyco_hydro_11; PF01522 Polysacc_deac_1 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 26565; Mature: 26565

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKKIITIVTIFITTVALFGTYKLMNARSFQLFGDLTNRVETNEKVIALTFDDGPTNNV
CCCCCEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCH
KQILPLLDTYNAKATFFLIGNELEKNLSLGKSIVQSGHQVGNHTYSHNRMVFKTPSFIKE
HHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCHHHCCCEECCCEEEEECHHHHHH
EIEKTNALIRQTGFTGAIDFRPPNGKKLIGLPYYLNKNNIETITWDLEPDTFYKSAADKI
HHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCHHHHHHHHHH
EYVNKNVKPGSIILLHSMYDESNESLQTIEGILDSLSKKGYQFVTVNELQKRTK
HHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEHHHHHHHCC
>Mature Secondary Structure
MKKKKIITIVTIFITTVALFGTYKLMNARSFQLFGDLTNRVETNEKVIALTFDDGPTNNV
CCCCCEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCH
KQILPLLDTYNAKATFFLIGNELEKNLSLGKSIVQSGHQVGNHTYSHNRMVFKTPSFIKE
HHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCHHHCCCEECCCEEEEECHHHHHH
EIEKTNALIRQTGFTGAIDFRPPNGKKLIGLPYYLNKNNIETITWDLEPDTFYKSAADKI
HHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCHHHHHHHHHH
EYVNKNVKPGSIILLHSMYDESNESLQTIEGILDSLSKKGYQFVTVNELQKRTK
HHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA