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The map label for this gene is sigW

Identifier: 222095341

GI number: 222095341

Start: 1657812

End: 1658351

Strand: Direct

Name: sigW

Synonym: BCQ_1681

Alternate gene names: NA

Gene position: 1657812-1658351 (Clockwise)

Preceding gene: 222095340

Following gene: 222095342

Centisome position: 31.79

GC content: 29.26

Gene sequence:

>540_bases
ATGATTTTCGATTCTGAAGTGGATTTAATTATAGCTATGAAAAAACGCGATCAAGATGCTTTGAAAGAAGTGATTGATCA
ATATGGAAAATTAATTTTGTACATTATTCATAAATCGTTAAGTACCCCTATTGAAAAACAATATGTGGATGATTGTTATA
ACGATGTATTTACTGTTATTTGGTTTCATATCGACCATTTTGATACAGAAAAGGGCAACTTAAAATCTTGGATGATTGGT
ATTACTAAACTAAAGGCGTTGGAATATAAAAAGAAAGTATATAAAGAGAATAAAATTGATAAAGACGTAGAGATAGATAC
AGGTGTCCATGATAGGTATGACATAGAACAAGAAGAAGAGATTATGGAAATAGTTCAAGATTTAAATAAGAAAGATCGAT
ATATCTTTTTAAAGAGGTATATTGATGGGTATTCCATTGATGACATTGCAAAAGAATTAAAAGTAACGGCGGATTATATA
TACAATCGAATTTCTCGTGGGAAGAAAAAAATTCAAAAACTATGGAAAGGGAGTGTGTAA

Upstream 100 bases:

>100_bases
AAAATTAATAGATTTTTACAAAAGTGATAGAAAATGAGAATGAAATGCCAATAGTAAGTAAAGGCAGCTGCTAAAGGGGA
ATTGAGGAAGGAAGATGCTT

Downstream 100 bases:

>100_bases
TATGGATAAAAGATTATTATCTATGTTAAATGAGCTCCAATATTCAGAGGAAGAGATTACACGTTTGGAGAAAGAAGCGG
ATGAGACTATAAATGTAGAT

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase; RNA Polymerase Sigma-70 Factor Family; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-70factor

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MIFDSEVDLIIAMKKRDQDALKEVIDQYGKLILYIIHKSLSTPIEKQYVDDCYNDVFTVIWFHIDHFDTEKGNLKSWMIG
ITKLKALEYKKKVYKENKIDKDVEIDTGVHDRYDIEQEEEIMEIVQDLNKKDRYIFLKRYIDGYSIDDIAKELKVTADYI
YNRISRGKKKIQKLWKGSV

Sequences:

>Translated_179_residues
MIFDSEVDLIIAMKKRDQDALKEVIDQYGKLILYIIHKSLSTPIEKQYVDDCYNDVFTVIWFHIDHFDTEKGNLKSWMIG
ITKLKALEYKKKVYKENKIDKDVEIDTGVHDRYDIEQEEEIMEIVQDLNKKDRYIFLKRYIDGYSIDDIAKELKVTADYI
YNRISRGKKKIQKLWKGSV
>Mature_179_residues
MIFDSEVDLIIAMKKRDQDALKEVIDQYGKLILYIIHKSLSTPIEKQYVDDCYNDVFTVIWFHIDHFDTEKGNLKSWMIG
ITKLKALEYKKKVYKENKIDKDVEIDTGVHDRYDIEQEEEIMEIVQDLNKKDRYIFLKRYIDGYSIDDIAKELKVTADYI
YNRISRGKKKIQKLWKGSV

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21384; Mature: 21384

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFDSEVDLIIAMKKRDQDALKEVIDQYGKLILYIIHKSLSTPIEKQYVDDCYNDVFTVI
CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
WFHIDHFDTEKGNLKSWMIGITKLKALEYKKKVYKENKIDKDVEIDTGVHDRYDIEQEEE
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
IMEIVQDLNKKDRYIFLKRYIDGYSIDDIAKELKVTADYIYNRISRGKKKIQKLWKGSV
HHHHHHHCCCCCCEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIFDSEVDLIIAMKKRDQDALKEVIDQYGKLILYIIHKSLSTPIEKQYVDDCYNDVFTVI
CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
WFHIDHFDTEKGNLKSWMIGITKLKALEYKKKVYKENKIDKDVEIDTGVHDRYDIEQEEE
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
IMEIVQDLNKKDRYIFLKRYIDGYSIDDIAKELKVTADYIYNRISRGKKKIQKLWKGSV
HHHHHHHCCCCCCEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA