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The map label for this gene is nrdF [H]

Identifier: 222095088

GI number: 222095088

Start: 1413369

End: 1413770

Strand: Direct

Name: nrdF [H]

Synonym: BCQ_1428

Alternate gene names: 222095088

Gene position: 1413369-1413770 (Clockwise)

Preceding gene: 222095087

Following gene: 222095089

Centisome position: 27.11

GC content: 35.82

Gene sequence:

>402_bases
GTGAAGGTAAAGGATGAGTCAATTCACGGCGTATTCGTCGGTATTTTAGCACAACAAATCTTCGCGGAACTTTCTGCAGA
AGATCAACAAGAAGTGCAAAAAGAAACGCAAGAGTTATTAATGGAACTATATGAAATTGAAATGGCATACACAGAAGAAA
TTTACACTTCTATTGGCCTTGTAGAGGATGTAAATCGTTTCGTTCGTTACAATGCGAATAAAGGACTTATGAACTTAGGA
CTTGAGCCGAAGTTTGAAGAAGAAGAAATTAACCCAATCGTTTTAAATGGTTTGCGTACAGATACGAAAAACCATGATTT
CTTCTCTGTAAAAGGAAATGGTTACGTAAAAGCGACGAACGTTGAAAAGTTATCTGATGATGACTTCGTGTTTAATTTTT
AA

Upstream 100 bases:

>100_bases
CTTAAATCGAAATGGAGGGCTACCTGAGAAGGTAGATGATATAGTCTCTTCTTACAGGAAACTGTAAGCTGTATAAACGG
CATAGGAGTAGCGAATCTAT

Downstream 100 bases:

>100_bases
TATATGATCATAAAGAAAAGCTGTCTTATCAATGAATAAGACAGCTTTTCTTTATGGTTTTGTTTACATAACACTATTAT
TTTCGTATAACGATTTCTGT

Product: ribonucleoside-diphosphate reductase, beta subunit

Products: NA

Alternate protein names: Ribonucleotide reductase small subunit [H]

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MKVKDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTSIGLVEDVNRFVRYNANKGLMNLG
LEPKFEEEEINPIVLNGLRTDTKNHDFFSVKGNGYVKATNVEKLSDDDFVFNF

Sequences:

>Translated_133_residues
MKVKDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTSIGLVEDVNRFVRYNANKGLMNLG
LEPKFEEEEINPIVLNGLRTDTKNHDFFSVKGNGYVKATNVEKLSDDDFVFNF
>Mature_133_residues
MKVKDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTSIGLVEDVNRFVRYNANKGLMNLG
LEPKFEEEEINPIVLNGLRTDTKNHDFFSVKGNGYVKATNVEKLSDDDFVFNF

Specific function: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides [H]

COG id: COG0208

COG function: function code F; Ribonucleotide reductase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonucleoside diphosphate reductase small chain family [H]

Homologues:

Organism=Escherichia coli, GI1789031, Length=132, Percent_Identity=40.9090909090909, Blast_Score=103, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009078
- InterPro:   IPR012348
- InterPro:   IPR000358 [H]

Pfam domain/function: PF00268 Ribonuc_red_sm [H]

EC number: =1.17.4.1 [H]

Molecular weight: Translated: 15306; Mature: 15306

Theoretical pI: Translated: 4.12; Mature: 4.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVKDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTSIGL
CCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNHDFFSVKGNGYVKATN
HHHHHHHHHCCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEECC
VEKLSDDDFVFNF
CCCCCCCCEEECC
>Mature Secondary Structure
MKVKDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTSIGL
CCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNHDFFSVKGNGYVKATN
HHHHHHHHHCCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEECC
VEKLSDDDFVFNF
CCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969495; 9384377 [H]