Click here to switch to the map view.

The map label for this gene is ydeD [H]

Identifier: 222094333

GI number: 222094333

Start: 638289

End: 639215

Strand: Reverse

Name: ydeD [H]

Synonym: BCQ_0647

Alternate gene names: 222094333

Gene position: 639215-638289 (Counterclockwise)

Preceding gene: 222094335

Following gene: 222094332

Centisome position: 12.26

GC content: 35.38

Gene sequence:

>927_bases
ATGAACAATAGTAGACGGATTGGACTCATTATGATTATTACAGGAGCTACCTTATGGGGATTATCTGGCCCGATGATTCA
GTGGCTATTTCAACATACTAACGTATCATCAATTGATTTTTTAACAATTCGATTGCTGCTTGCGGGAATATTTATTTTAT
CTTTTTTACTGATAAAGAAACAAAACATTTTTCAAATTTGGAAACACACTAGACATTCTATACAACTTATTATTTTCTCT
ATTCTCGGCATGCTCGGTGCACAATACGCCTTTATCGAAACAGTTCATATTAGTAATGCGGTCACAGCGACATTATTTCA
ATTTCTAGGTCCTGTTCTTATTACCATTTATGTCGCATTTGAACAACGAAAATTCCCTGCTTATATGCAACTACTCGCCA
TTATAACTGCACTCACGGGAACGTACTTTATTATTACAAACGGTTCAATTGAAAATATTGTTTTATCGAAAGAAGCCATT
ATTTTTGGCCTATTAACAGCAATTGGATTTGCATTTTATACCCTCCATCCAGCTTCCCTTATTAAAGAATGCGGAACAAC
TGTAGTAATTGGCTGGGGAATGTTAATTGGCGGCATTGCCCTGCTTATTTGTAATCGCTCGTTTGAATGGGATCAGCTTT
CACAAACTTTTACACTAAAAACTTTTTCTATACTTATTCTTATCATCATAAGTGGCACCCTTTCTTTTCTTCTTTATATC
GGTAGTCTGAAATATTTAGCAGCAACAGAAACGAGCATTTTATCTAGCATTGAACCACTTGTAGCAGCTATCGTTTCAAT
CGCTTGGCTAAATGAATCATTTGGAGCGTATCAATTACTAGGCGGCGTATGTATCGTTCTTTCTGTTATTTTCTTAACGA
TGCCTCAAAAAGAACGAGAACCAACCTTTTCAACTGAACAAATATAA

Upstream 100 bases:

>100_bases
AACTTAAATCTGATACTTTTTAGAGTACCAGAAGTTATATATAATTCCTTTTATCATGTCACACATAAAAAATCAAATAC
TCGAGAGGAGATGCATGATT

Downstream 100 bases:

>100_bases
AAAATGTCAAAAGAGGTCGTACAAAACTTACGACCTCTTTTTATACTTTAAAGGAATTGTCCCTCTTTCTGGCAAATACA
ATTACACTAACAGTAAAAAT

Product: transporter, dmt family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MNNSRRIGLIMIITGATLWGLSGPMIQWLFQHTNVSSIDFLTIRLLLAGIFILSFLLIKKQNIFQIWKHTRHSIQLIIFS
ILGMLGAQYAFIETVHISNAVTATLFQFLGPVLITIYVAFEQRKFPAYMQLLAIITALTGTYFIITNGSIENIVLSKEAI
IFGLLTAIGFAFYTLHPASLIKECGTTVVIGWGMLIGGIALLICNRSFEWDQLSQTFTLKTFSILILIIISGTLSFLLYI
GSLKYLAATETSILSSIEPLVAAIVSIAWLNESFGAYQLLGGVCIVLSVIFLTMPQKEREPTFSTEQI

Sequences:

>Translated_308_residues
MNNSRRIGLIMIITGATLWGLSGPMIQWLFQHTNVSSIDFLTIRLLLAGIFILSFLLIKKQNIFQIWKHTRHSIQLIIFS
ILGMLGAQYAFIETVHISNAVTATLFQFLGPVLITIYVAFEQRKFPAYMQLLAIITALTGTYFIITNGSIENIVLSKEAI
IFGLLTAIGFAFYTLHPASLIKECGTTVVIGWGMLIGGIALLICNRSFEWDQLSQTFTLKTFSILILIIISGTLSFLLYI
GSLKYLAATETSILSSIEPLVAAIVSIAWLNESFGAYQLLGGVCIVLSVIFLTMPQKEREPTFSTEQI
>Mature_308_residues
MNNSRRIGLIMIITGATLWGLSGPMIQWLFQHTNVSSIDFLTIRLLLAGIFILSFLLIKKQNIFQIWKHTRHSIQLIIFS
ILGMLGAQYAFIETVHISNAVTATLFQFLGPVLITIYVAFEQRKFPAYMQLLAIITALTGTYFIITNGSIENIVLSKEAI
IFGLLTAIGFAFYTLHPASLIKECGTTVVIGWGMLIGGIALLICNRSFEWDQLSQTFTLKTFSILILIIISGTLSFLLYI
GSLKYLAATETSILSSIEPLVAAIVSIAWLNESFGAYQLLGGVCIVLSVIFLTMPQKEREPTFSTEQI

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI1790092, Length=302, Percent_Identity=35.0993377483444, Blast_Score=160, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 34172; Mature: 34172

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNSRRIGLIMIITGATLWGLSGPMIQWLFQHTNVSSIDFLTIRLLLAGIFILSFLLIKK
CCCCCEEEEEEEEECCHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QNIFQIWKHTRHSIQLIIFSILGMLGAQYAFIETVHISNAVTATLFQFLGPVLITIYVAF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHH
EQRKFPAYMQLLAIITALTGTYFIITNGSIENIVLSKEAIIFGLLTAIGFAFYTLHPASL
HCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHCCHHHH
IKECGTTVVIGWGMLIGGIALLICNRSFEWDQLSQTFTLKTFSILILIIISGTLSFLLYI
HHHCCCEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GSLKYLAATETSILSSIEPLVAAIVSIAWLNESFGAYQLLGGVCIVLSVIFLTMPQKERE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
PTFSTEQI
CCCCCCCC
>Mature Secondary Structure
MNNSRRIGLIMIITGATLWGLSGPMIQWLFQHTNVSSIDFLTIRLLLAGIFILSFLLIKK
CCCCCEEEEEEEEECCHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QNIFQIWKHTRHSIQLIIFSILGMLGAQYAFIETVHISNAVTATLFQFLGPVLITIYVAF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHH
EQRKFPAYMQLLAIITALTGTYFIITNGSIENIVLSKEAIIFGLLTAIGFAFYTLHPASL
HCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHCCHHHH
IKECGTTVVIGWGMLIGGIALLICNRSFEWDQLSQTFTLKTFSILILIIISGTLSFLLYI
HHHCCCEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GSLKYLAATETSILSSIEPLVAAIVSIAWLNESFGAYQLLGGVCIVLSVIFLTMPQKERE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
PTFSTEQI
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]