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The map label for this gene is codV [H]

Identifier: 222094274

GI number: 222094274

Start: 570944

End: 571936

Strand: Direct

Name: codV [H]

Synonym: BCQ_0587

Alternate gene names: 222094274

Gene position: 570944-571936 (Clockwise)

Preceding gene: 222094272

Following gene: 222094276

Centisome position: 10.95

GC content: 33.33

Gene sequence:

>993_bases
TTGGCTAGAAGAAAAAACACTTTAGATGAAAGTGAATTAGCTGTTATTAAAAAGCAAAGTAAATCCTATGTTGAAACGTT
TAATGAAGCTATCACCTTGTTTGTAAAGGATTGTGAGTTAAGAAATCTTCGACCATTTACCATTAAGTATTATTTAAATG
AGTTACAGGCGTTTCTTAATTTATTAACAGAACAAGAAATAGACGTTTCTATTTTAAAACCTTATAACATGACTGAAGAA
CATGTAAAAGAAAACGTGATACTTTACATGAAAAATTATAGAGGAATTAAAGTAGTTTCTATTAATACTCGTTTACGTGC
ATTACGTGCTTTTTATAACTTCTTATACAAGCAGAAGCACATTCCTAGAAATCCAATGGAAAACATTAAGTTGTTGAAAG
ACAGGAAACGTATTATTCCTACTTTTTCAAAAGAACAGCTTAATAAGCTATTCCATCAGCCTAATTTAAGGACATTTACG
GGCGTTAGGGATTACACAATTATGATGCTAATGCTTGAAACAGGTATACGTATAAATGAACTAGTGGGGCTGTCTGTAAA
GGATATTCGATGGGAGGATAGTTTGCTTGTAATTCGTAACGCTAAAAGCTATCGAGAACGGCAAGTACCTATACAAAAAG
ATATGAAAAGCCAACTGAAAAAGTATATCGCTATTCGTGGGTATGTTGAAAGTAATGCTTTATTTGTCACTGTTGATGGG
ACACGCCTTACCAGAAGAGGAATACAGCAACGAATATCTATATACGGCAACATGGCACAAATAAAAGATGTGCGTTGTAG
TCCTCACACGTTTAGACACACATTTGCCAAACTAAGTGTACAGCAAGGTGCGAATATATTTGAGTTACAAGCCATACTGG
GACACACCAATATGGAGATTGTTAAAACATATGTAAATTTATTTGGTAATGACGTAAGAGAACGGCATAAAGAATTTTCC
CCGTTAAAGGTACTTAATAAACGATATTTATAA

Upstream 100 bases:

>100_bases
GGCGTTTTTTTGTGTTTTCAGGGGTAATTTTGCTTGAAAAATCCACTTTTAAAATCGTATTCATTGGTCGTGTTCACAGG
TAAAGAAAGGTGGTTAACTT

Downstream 100 bases:

>100_bases
AAATTTTAGACAAAGAAAAAAGCCACGTGTTACAGCACGTGACCTAAGGTTTAAAAATCGACTCAAAACTAAATAACGGA
CAATTTCGTATATTCAATAG

Product: site-specific integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MARRKNTLDESELAVIKKQSKSYVETFNEAITLFVKDCELRNLRPFTIKYYLNELQAFLNLLTEQEIDVSILKPYNMTEE
HVKENVILYMKNYRGIKVVSINTRLRALRAFYNFLYKQKHIPRNPMENIKLLKDRKRIIPTFSKEQLNKLFHQPNLRTFT
GVRDYTIMMLMLETGIRINELVGLSVKDIRWEDSLLVIRNAKSYRERQVPIQKDMKSQLKKYIAIRGYVESNALFVTVDG
TRLTRRGIQQRISIYGNMAQIKDVRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIVKTYVNLFGNDVRERHKEFS
PLKVLNKRYL

Sequences:

>Translated_330_residues
MARRKNTLDESELAVIKKQSKSYVETFNEAITLFVKDCELRNLRPFTIKYYLNELQAFLNLLTEQEIDVSILKPYNMTEE
HVKENVILYMKNYRGIKVVSINTRLRALRAFYNFLYKQKHIPRNPMENIKLLKDRKRIIPTFSKEQLNKLFHQPNLRTFT
GVRDYTIMMLMLETGIRINELVGLSVKDIRWEDSLLVIRNAKSYRERQVPIQKDMKSQLKKYIAIRGYVESNALFVTVDG
TRLTRRGIQQRISIYGNMAQIKDVRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIVKTYVNLFGNDVRERHKEFS
PLKVLNKRYL
>Mature_329_residues
ARRKNTLDESELAVIKKQSKSYVETFNEAITLFVKDCELRNLRPFTIKYYLNELQAFLNLLTEQEIDVSILKPYNMTEEH
VKENVILYMKNYRGIKVVSINTRLRALRAFYNFLYKQKHIPRNPMENIKLLKDRKRIIPTFSKEQLNKLFHQPNLRTFTG
VRDYTIMMLMLETGIRINELVGLSVKDIRWEDSLLVIRNAKSYRERQVPIQKDMKSQLKKYIAIRGYVESNALFVTVDGT
RLTRRGIQQRISIYGNMAQIKDVRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIVKTYVNLFGNDVRERHKEFSP
LKVLNKRYL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from xerD binding sites by a short central region, forming

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=275, Percent_Identity=25.4545454545455, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1789261, Length=309, Percent_Identity=24.2718446601942, Blast_Score=106, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 39044; Mature: 38913

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARRKNTLDESELAVIKKQSKSYVETFNEAITLFVKDCELRNLRPFTIKYYLNELQAFLN
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHH
LLTEQEIDVSILKPYNMTEEHVKENVILYMKNYRGIKVVSINTRLRALRAFYNFLYKQKH
HHHCCCCCEEEECCCCCCHHHHHCCEEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHCC
IPRNPMENIKLLKDRKRIIPTFSKEQLNKLFHQPNLRTFTGVRDYTIMMLMLETGIRINE
CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEECCCHHHHHHHHHHHCCCCCHH
LVGLSVKDIRWEDSLLVIRNAKSYRERQVPIQKDMKSQLKKYIAIRGYVESNALFVTVDG
HHCCCEECCCCCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHEEEECCEEEEEECC
TRLTRRGIQQRISIYGNMAQIKDVRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEI
HHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHCCCCHHH
VKTYVNLFGNDVRERHKEFSPLKVLNKRYL
HHHHHHHHCHHHHHHHHCCCHHHHHHHCCC
>Mature Secondary Structure 
ARRKNTLDESELAVIKKQSKSYVETFNEAITLFVKDCELRNLRPFTIKYYLNELQAFLN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHH
LLTEQEIDVSILKPYNMTEEHVKENVILYMKNYRGIKVVSINTRLRALRAFYNFLYKQKH
HHHCCCCCEEEECCCCCCHHHHHCCEEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHCC
IPRNPMENIKLLKDRKRIIPTFSKEQLNKLFHQPNLRTFTGVRDYTIMMLMLETGIRINE
CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEECCCHHHHHHHHHHHCCCCCHH
LVGLSVKDIRWEDSLLVIRNAKSYRERQVPIQKDMKSQLKKYIAIRGYVESNALFVTVDG
HHCCCEECCCCCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHEEEECCEEEEEECC
TRLTRRGIQQRISIYGNMAQIKDVRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEI
HHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHCCCCHHH
VKTYVNLFGNDVRERHKEFSPLKVLNKRYL
HHHHHHHHCHHHHHHHHCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]