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The map label for this gene is yhfW [H]

Identifier: 222094143

GI number: 222094143

Start: 425171

End: 426697

Strand: Reverse

Name: yhfW [H]

Synonym: BCQ_0436

Alternate gene names: 222094143

Gene position: 426697-425171 (Counterclockwise)

Preceding gene: 222094145

Following gene: 222094142

Centisome position: 8.18

GC content: 36.94

Gene sequence:

>1527_bases
ATGACAAGCGATACATTTCCACAATTCCCATCATCTTATTGGATTGAATCTACTCAACTCCCTGCTTTTCCCCCTTTATC
TGAAAATATAAAGACAAAAGTCGCTATTATAGGTGCTGGTATTACAGGTATTACTACTGCCTATTTACTTGCAAAAGAAG
GCATCGATGTTGTATTAATTGATTCTGGTCTTATTTTAAACGGGACGACTGGACATACAACAGCGAAGATAACAGCGCAA
CATGATCTTATTTATGATGAATTAATAAACCATTTCGGTATGGAAAAGGCCGGGCTTTTCTATGAATCAAATAATCATGC
TCTACAATTTATTAATGAAACTTTGCAAACATATAAAATCGACTGTAATTTCTCAAATGAAGATTCATATTTATATACAA
CTACTGATAAGGGATTAAGAAATTTATCGAAAGAATATGAAGCTTATCAAAAATTAAATATACCTTGTGACTATGTTCAA
TCTCTATCGATTCCAATTCCAGTACAATCTGCACTTGTCATGAAAAATCAAGCCCAGTTTCATCCCCTTCTTTATTTGAA
AACGCTTTTAGAAAAGTTTGTGGAGATGGGTGGAAAAGTTTATGAACAAACGACTGCCATGGATGTAGAAAAAGGAGATT
CTCCACAAGTCATTACAAAGGGCGGACATCGCATTACTTGTGAATATGTTGTCTCTTGTTCACACTTTCCTTTTTATGAT
GCGAATAGCTTTTTCTTTACACGAATGTACGCAGAACGCTCTTATGCTCTTGCTATTAAAACAAAAACAGATTATCCAGG
TGGCATGTATTTAAGTATTGATGACCCAAAGCGCTCCTTACGCTACACAACAAGCAATGGGGAAAAATTAATTTTAATTG
GCGGAGAAAGTCATAAAACAGGCCAAGGAATAAACACGATGCTTCATTATGAAGCACTGTATTCTTTTGCAGAAGCAACG
TTTGGGGTAGATGAGGTTCCTTATAGATGGTCAGCACAAGATTTAATCACGCTAGATAAGGTCCCTTATATCGGACATAT
TAACGAGAGCAATCCAAATATATTTGTTGCAACTGGATATCGTAAATGGGGGATGACAACTGGAACTGCTGCCGCTCATT
TACTGAAGGATTCCATTCTAAAAGTAGACAGTCCATATAAAGAACTATATGCACCTTCACGCTTTCATGCAAATCCAGAT
ATAAAAACGTTCTTCTCCCAAAACATTGATGTTGCGAAACATTTAATTGAAGGAAAGATTGAAACTGCATTACGTAAGCC
AGAAGATCTCGAAGTTGGTGAAGGATCTGTCGTACATGTTAACGGGAAACGAGCAGGTGCTTATAAGGACAAAGATGGAA
AATTACATATTGTCGATACAACTTGTACACATCTCGGCTGCGAAGTTGAATGGAATAATGGTGATTGTACTTGGGACTGC
CCTTGCCACGGTTCCCGTTTTTCAATTGAAGGAGGTGTTATTGAAGGTCCGGCAGATCAACCGTTAAAACGAGTTGATAA
TGAGTAA

Upstream 100 bases:

>100_bases
TTTTAAATAAAAATAGCCTTCCTCTAAAACAGCACACATGAATTTCATCTCATATGGAAATATTAAAAGGAAAATTGTTC
TAAATCAGGAGGTTTCCTTA

Downstream 100 bases:

>100_bases
ATAAAGAAGTTCAACAGAATGACTGTTGAACTTCTTTATTTACTATAAAACTTTTTCATATAAATTCCGACATAAGAAGG
GAAATATTAACATCAAATGA

Product: rieske 2fe-2S iron-sulfur protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 508; Mature: 507

Protein sequence:

>508_residues
MTSDTFPQFPSSYWIESTQLPAFPPLSENIKTKVAIIGAGITGITTAYLLAKEGIDVVLIDSGLILNGTTGHTTAKITAQ
HDLIYDELINHFGMEKAGLFYESNNHALQFINETLQTYKIDCNFSNEDSYLYTTTDKGLRNLSKEYEAYQKLNIPCDYVQ
SLSIPIPVQSALVMKNQAQFHPLLYLKTLLEKFVEMGGKVYEQTTAMDVEKGDSPQVITKGGHRITCEYVVSCSHFPFYD
ANSFFFTRMYAERSYALAIKTKTDYPGGMYLSIDDPKRSLRYTTSNGEKLILIGGESHKTGQGINTMLHYEALYSFAEAT
FGVDEVPYRWSAQDLITLDKVPYIGHINESNPNIFVATGYRKWGMTTGTAAAHLLKDSILKVDSPYKELYAPSRFHANPD
IKTFFSQNIDVAKHLIEGKIETALRKPEDLEVGEGSVVHVNGKRAGAYKDKDGKLHIVDTTCTHLGCEVEWNNGDCTWDC
PCHGSRFSIEGGVIEGPADQPLKRVDNE

Sequences:

>Translated_508_residues
MTSDTFPQFPSSYWIESTQLPAFPPLSENIKTKVAIIGAGITGITTAYLLAKEGIDVVLIDSGLILNGTTGHTTAKITAQ
HDLIYDELINHFGMEKAGLFYESNNHALQFINETLQTYKIDCNFSNEDSYLYTTTDKGLRNLSKEYEAYQKLNIPCDYVQ
SLSIPIPVQSALVMKNQAQFHPLLYLKTLLEKFVEMGGKVYEQTTAMDVEKGDSPQVITKGGHRITCEYVVSCSHFPFYD
ANSFFFTRMYAERSYALAIKTKTDYPGGMYLSIDDPKRSLRYTTSNGEKLILIGGESHKTGQGINTMLHYEALYSFAEAT
FGVDEVPYRWSAQDLITLDKVPYIGHINESNPNIFVATGYRKWGMTTGTAAAHLLKDSILKVDSPYKELYAPSRFHANPD
IKTFFSQNIDVAKHLIEGKIETALRKPEDLEVGEGSVVHVNGKRAGAYKDKDGKLHIVDTTCTHLGCEVEWNNGDCTWDC
PCHGSRFSIEGGVIEGPADQPLKRVDNE
>Mature_507_residues
TSDTFPQFPSSYWIESTQLPAFPPLSENIKTKVAIIGAGITGITTAYLLAKEGIDVVLIDSGLILNGTTGHTTAKITAQH
DLIYDELINHFGMEKAGLFYESNNHALQFINETLQTYKIDCNFSNEDSYLYTTTDKGLRNLSKEYEAYQKLNIPCDYVQS
LSIPIPVQSALVMKNQAQFHPLLYLKTLLEKFVEMGGKVYEQTTAMDVEKGDSPQVITKGGHRITCEYVVSCSHFPFYDA
NSFFFTRMYAERSYALAIKTKTDYPGGMYLSIDDPKRSLRYTTSNGEKLILIGGESHKTGQGINTMLHYEALYSFAEATF
GVDEVPYRWSAQDLITLDKVPYIGHINESNPNIFVATGYRKWGMTTGTAAAHLLKDSILKVDSPYKELYAPSRFHANPDI
KTFFSQNIDVAKHLIEGKIETALRKPEDLEVGEGSVVHVNGKRAGAYKDKDGKLHIVDTTCTHLGCEVEWNNGDCTWDCP
CHGSRFSIEGGVIEGPADQPLKRVDNE

Specific function: Unknown

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1787559, Length=403, Percent_Identity=23.0769230769231, Blast_Score=90, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR017941
- InterPro:   IPR005805 [H]

Pfam domain/function: PF01266 DAO; PF00355 Rieske [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 56732; Mature: 56600

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS00136 SUBTILASE_ASP ; PS00200 RIESKE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSDTFPQFPSSYWIESTQLPAFPPLSENIKTKVAIIGAGITGITTAYLLAKEGIDVVLI
CCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEE
DSGLILNGTTGHTTAKITAQHDLIYDELINHFGMEKAGLFYESNNHALQFINETLQTYKI
ECCEEEECCCCCEEEEEEECHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHEEEE
DCNFSNEDSYLYTTTDKGLRNLSKEYEAYQKLNIPCDYVQSLSIPIPVQSALVMKNQAQF
EEEECCCCCEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHCCCCCHH
HPLLYLKTLLEKFVEMGGKVYEQTTAMDVEKGDSPQVITKGGHRITCEYVVSCSHFPFYD
HHHHHHHHHHHHHHHCCCEEEHHHHEEECCCCCCCCEEECCCCEEEEEEEEEECCCCCCC
ANSFFFTRMYAERSYALAIKTKTDYPGGMYLSIDDPKRSLRYTTSNGEKLILIGGESHKT
CCCEEEEEEECCCEEEEEEEECCCCCCEEEEEECCCCCCEEEEECCCCEEEEECCCCCCC
GQGINTMLHYEALYSFAEATFGVDEVPYRWSAQDLITLDKVPYIGHINESNPNIFVATGY
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCEEEEECC
RKWGMTTGTAAAHLLKDSILKVDSPYKELYAPSRFHANPDIKTFFSQNIDVAKHLIEGKI
HHCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHH
ETALRKPEDLEVGEGSVVHVNGKRAGAYKDKDGKLHIVDTTCTHLGCEVEWNNGDCTWDC
HHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCHHHEEEEEEECCCCEEEEC
PCHGSRFSIEGGVIEGPADQPLKRVDNE
CCCCCEEEECCCEEECCCCCHHHHCCCC
>Mature Secondary Structure 
TSDTFPQFPSSYWIESTQLPAFPPLSENIKTKVAIIGAGITGITTAYLLAKEGIDVVLI
CCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEE
DSGLILNGTTGHTTAKITAQHDLIYDELINHFGMEKAGLFYESNNHALQFINETLQTYKI
ECCEEEECCCCCEEEEEEECHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHEEEE
DCNFSNEDSYLYTTTDKGLRNLSKEYEAYQKLNIPCDYVQSLSIPIPVQSALVMKNQAQF
EEEECCCCCEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHCCCCCHH
HPLLYLKTLLEKFVEMGGKVYEQTTAMDVEKGDSPQVITKGGHRITCEYVVSCSHFPFYD
HHHHHHHHHHHHHHHCCCEEEHHHHEEECCCCCCCCEEECCCCEEEEEEEEEECCCCCCC
ANSFFFTRMYAERSYALAIKTKTDYPGGMYLSIDDPKRSLRYTTSNGEKLILIGGESHKT
CCCEEEEEEECCCEEEEEEEECCCCCCEEEEEECCCCCCEEEEECCCCEEEEECCCCCCC
GQGINTMLHYEALYSFAEATFGVDEVPYRWSAQDLITLDKVPYIGHINESNPNIFVATGY
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCEEEEECC
RKWGMTTGTAAAHLLKDSILKVDSPYKELYAPSRFHANPDIKTFFSQNIDVAKHLIEGKI
HHCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHH
ETALRKPEDLEVGEGSVVHVNGKRAGAYKDKDGKLHIVDTTCTHLGCEVEWNNGDCTWDC
HHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCHHHEEEEEEECCCCEEEEC
PCHGSRFSIEGGVIEGPADQPLKRVDNE
CCCCCEEEECCCEEECCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]