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The map label for this gene is ycfH [C]

Identifier: 222093982

GI number: 222093982

Start: 213352

End: 214116

Strand: Direct

Name: ycfH [C]

Synonym: BCQ_0238

Alternate gene names: 222093982

Gene position: 213352-214116 (Clockwise)

Preceding gene: 222093981

Following gene: 222093984

Centisome position: 4.09

GC content: 32.42

Gene sequence:

>765_bases
GTGAAGTGGATTGATAGTCATATACATGTTGATCAATATAAGGATGAAGAGAAAAGTAAATTACTTAAAGATGTGGAGCA
TAGTAAAGAGATAAAGGGGCTTATTGCAGTATCTATGAATTATCAATCATGTAAAGAAACTTTATCTTTAGCAAAACTAT
ATCCTTTTGTACATCCAGCAATAGGTTTTCATCCGGAGCAACCGATTCATAAAGAAGAATGTGAGCAAATTTATAAATTA
ATTGAAGAGCATGTAGATGATATAGTTGCGATTGGTGAAGTTGGCTTACCGTATTATTTAAGAAAAGAAGATGAGCGCAT
TGCTATCAATTCGTATATATCAGTGTTACAACGGTTTGTTGAACTAGCTAGTAAATATGATTTACCAATTATATTGCATG
CAGTGTATGAAGACGCTGATATTGTATGTGATTTACTGGAGAAATATAAAGTTTCACGTGCACACTTTCATTGGTTTAAA
GGAAGTGAAACAACAATGAAACGGATGATAAGGAATGGGTATTACATTTCTATCACGCCAGATGTTTTACATAAGGATAA
GATTAGAAAAATTGTTTCGTATTATCCTCTTGAATATATGATGGTAGAAACAGATGGACCGTGGGAATTTCAAGAGGGTG
TTATGACACATCCGAGAATGATTCGAGAAGTATTAAAGGAAATTAGTGTTATAAAAAACGTAGCTGTTGATAAGGTTGCA
GAAACGATATATGAAAATACGATTCAATTTTATTTGAAAGGATAG

Upstream 100 bases:

>100_bases
ATTGGGTTATTTGATATCATAACAAACTTAATTGTTAAATAATATAGATGACAAAACAAGAAGGGAGATCCTTTCTTGTT
TTTTTTATGGGGGAATAAAG

Downstream 100 bases:

>100_bases
AATTGTTATTTTAGCCCTTCTTATTATAGAGAAATAGAAGTTGAATTTATTTATGAACATAATCAATGGGTTATTAATAA
TATGCCACGTTTTGGTTTAA

Product: deoxyribonuclease, tatd family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MKWIDSHIHVDQYKDEEKSKLLKDVEHSKEIKGLIAVSMNYQSCKETLSLAKLYPFVHPAIGFHPEQPIHKEECEQIYKL
IEEHVDDIVAIGEVGLPYYLRKEDERIAINSYISVLQRFVELASKYDLPIILHAVYEDADIVCDLLEKYKVSRAHFHWFK
GSETTMKRMIRNGYYISITPDVLHKDKIRKIVSYYPLEYMMVETDGPWEFQEGVMTHPRMIREVLKEISVIKNVAVDKVA
ETIYENTIQFYLKG

Sequences:

>Translated_254_residues
MKWIDSHIHVDQYKDEEKSKLLKDVEHSKEIKGLIAVSMNYQSCKETLSLAKLYPFVHPAIGFHPEQPIHKEECEQIYKL
IEEHVDDIVAIGEVGLPYYLRKEDERIAINSYISVLQRFVELASKYDLPIILHAVYEDADIVCDLLEKYKVSRAHFHWFK
GSETTMKRMIRNGYYISITPDVLHKDKIRKIVSYYPLEYMMVETDGPWEFQEGVMTHPRMIREVLKEISVIKNVAVDKVA
ETIYENTIQFYLKG
>Mature_254_residues
MKWIDSHIHVDQYKDEEKSKLLKDVEHSKEIKGLIAVSMNYQSCKETLSLAKLYPFVHPAIGFHPEQPIHKEECEQIYKL
IEEHVDDIVAIGEVGLPYYLRKEDERIAINSYISVLQRFVELASKYDLPIILHAVYEDADIVCDLLEKYKVSRAHFHWFK
GSETTMKRMIRNGYYISITPDVLHKDKIRKIVSYYPLEYMMVETDGPWEFQEGVMTHPRMIREVLKEISVIKNVAVDKVA
ETIYENTIQFYLKG

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=244, Percent_Identity=27.0491803278689, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI110349734, Length=244, Percent_Identity=27.0491803278689, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI226061853, Length=251, Percent_Identity=26.2948207171315, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI226061595, Length=204, Percent_Identity=26.9607843137255, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI226061614, Length=230, Percent_Identity=25.2173913043478, Blast_Score=76, Evalue=3e-14,
Organism=Escherichia coli, GI1787342, Length=261, Percent_Identity=26.8199233716475, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI87082439, Length=260, Percent_Identity=24.2307692307692, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29887; Mature: 29887

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWIDSHIHVDQYKDEEKSKLLKDVEHSKEIKGLIAVSMNYQSCKETLSLAKLYPFVHPA
CCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHH
IGFHPEQPIHKEECEQIYKLIEEHVDDIVAIGEVGLPYYLRKEDERIAINSYISVLQRFV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHHH
ELASKYDLPIILHAVYEDADIVCDLLEKYKVSRAHFHWFKGSETTMKRMIRNGYYISITP
HHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHCCEEEEECH
DVLHKDKIRKIVSYYPLEYMMVETDGPWEFQEGVMTHPRMIREVLKEISVIKNVAVDKVA
HHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ETIYENTIQFYLKG
HHHHHHHHHHEECC
>Mature Secondary Structure
MKWIDSHIHVDQYKDEEKSKLLKDVEHSKEIKGLIAVSMNYQSCKETLSLAKLYPFVHPA
CCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHH
IGFHPEQPIHKEECEQIYKLIEEHVDDIVAIGEVGLPYYLRKEDERIAINSYISVLQRFV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHHH
ELASKYDLPIILHAVYEDADIVCDLLEKYKVSRAHFHWFKGSETTMKRMIRNGYYISITP
HHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHCCEEEEECH
DVLHKDKIRKIVSYYPLEYMMVETDGPWEFQEGVMTHPRMIREVLKEISVIKNVAVDKVA
HHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ETIYENTIQFYLKG
HHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]