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The map label for this gene is ybfP [H]

Identifier: 222093958

GI number: 222093958

Start: 192106

End: 193005

Strand: Direct

Name: ybfP [H]

Synonym: BCQ_0214

Alternate gene names: 222093958

Gene position: 192106-193005 (Clockwise)

Preceding gene: 222093956

Following gene: 222093959

Centisome position: 3.68

GC content: 34.89

Gene sequence:

>900_bases
ATGCATGAAGAGTATAAAGAGATAATAAAAAAATCAATTGAATATATAGAGAATCACTTACATGAGGAGCTTACAACAGA
AAGAGTGGCATCTTACAGTGCAGTATCGATGTACCATTTTCATCGTATCTTTCAAAGATATGTTGGGATGAGTGTAACGG
ATTATATTCGAAAGAGAAGGTTAACTCATGCTGCGCAGACTTTAGTATCGACTGAAAGAGCAGTTATTGATATTGCAATG
CAATATGGTTTTTCCTCACAAGAGGCATTTACGAGAGCTTTTAAAAGAATGTTTCAATTGCCACCAAAGAAATATCGAAA
GTACTTCCAGTCATTTTATATAGAAAGAGAGGGTGTTTCAATGCAAAAAGGTATACCGAAAGGATGGATCTTAAGTGGAA
GTCATCCTGCTGAATATGAGATGGGTTTAGATTATGAAGTTGTCCATCAAGGGAAAGTATCTGCATACATAAAAGCAAAA
GAGAATGTTACGCACGGAGGATTTTCAACATTAATGCAAATGTTCAGAGCAGATAAATATGTAGGGAAGAGATTACGTTT
TACAGCATTTGTTAAGAGTGAAAATGTAAGAGATTGGGCAGGATTGTGGATGCGAGTAGATGGAAAAGAGACAGAACCGC
TTGCTATGGATAATATGCAAAATCGTCCCATTAAAAATACGAATAATTGGCAATCGTACTCAGTTGTATTAGATATAAAA
GAAGGAGCGCTTGGTATTGCATTTGGTGTTTTATTATCAGGAGAAGGTTATGTGTGGCTAGATAGTATTCGATTTGATGA
AGTAGATGAAAAAATTCCTACAACAGATTTGGCAGAGAACTTTTATGAAACACTCTTAGAAGAACCAGTGAATCTACAAT
TTGAAGAATTAGAAAAATAA

Upstream 100 bases:

>100_bases
AATAAATTATTATTCTGTAGTCATAAGGGCTAATCCGCAATTTAAATCAAAAACGATTTGTATGTATATGGTAAATTGAA
GTTGTGAGGGAGGGACTAAA

Downstream 100 bases:

>100_bases
AAAAAGGAGAAAAGATATGCTCAAATATGTAAAACTAATAAGTATTAGTTTAGTAATATCGTCTTGTATTATGGGAATTA
ATTATTTAGTTAGCTATCTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MHEEYKEIIKKSIEYIENHLHEELTTERVASYSAVSMYHFHRIFQRYVGMSVTDYIRKRRLTHAAQTLVSTERAVIDIAM
QYGFSSQEAFTRAFKRMFQLPPKKYRKYFQSFYIEREGVSMQKGIPKGWILSGSHPAEYEMGLDYEVVHQGKVSAYIKAK
ENVTHGGFSTLMQMFRADKYVGKRLRFTAFVKSENVRDWAGLWMRVDGKETEPLAMDNMQNRPIKNTNNWQSYSVVLDIK
EGALGIAFGVLLSGEGYVWLDSIRFDEVDEKIPTTDLAENFYETLLEEPVNLQFEELEK

Sequences:

>Translated_299_residues
MHEEYKEIIKKSIEYIENHLHEELTTERVASYSAVSMYHFHRIFQRYVGMSVTDYIRKRRLTHAAQTLVSTERAVIDIAM
QYGFSSQEAFTRAFKRMFQLPPKKYRKYFQSFYIEREGVSMQKGIPKGWILSGSHPAEYEMGLDYEVVHQGKVSAYIKAK
ENVTHGGFSTLMQMFRADKYVGKRLRFTAFVKSENVRDWAGLWMRVDGKETEPLAMDNMQNRPIKNTNNWQSYSVVLDIK
EGALGIAFGVLLSGEGYVWLDSIRFDEVDEKIPTTDLAENFYETLLEEPVNLQFEELEK
>Mature_299_residues
MHEEYKEIIKKSIEYIENHLHEELTTERVASYSAVSMYHFHRIFQRYVGMSVTDYIRKRRLTHAAQTLVSTERAVIDIAM
QYGFSSQEAFTRAFKRMFQLPPKKYRKYFQSFYIEREGVSMQKGIPKGWILSGSHPAEYEMGLDYEVVHQGKVSAYIKAK
ENVTHGGFSTLMQMFRADKYVGKRLRFTAFVKSENVRDWAGLWMRVDGKETEPLAMDNMQNRPIKNTNNWQSYSVVLDIK
EGALGIAFGVLLSGEGYVWLDSIRFDEVDEKIPTTDLAENFYETLLEEPVNLQFEELEK

Specific function: Probable transcriptional regulator [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=100, Percent_Identity=41, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI87081928, Length=98, Percent_Identity=38.7755102040816, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790497, Length=102, Percent_Identity=39.2156862745098, Blast_Score=82, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34959; Mature: 34959

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEEYKEIIKKSIEYIENHLHEELTTERVASYSAVSMYHFHRIFQRYVGMSVTDYIRKRR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LTHAAQTLVSTERAVIDIAMQYGFSSQEAFTRAFKRMFQLPPKKYRKYFQSFYIEREGVS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
MQKGIPKGWILSGSHPAEYEMGLDYEVVHQGKVSAYIKAKENVTHGGFSTLMQMFRADKY
HHHCCCCCEEECCCCCCCCCCCCCHHEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHH
VGKRLRFTAFVKSENVRDWAGLWMRVDGKETEPLAMDNMQNRPIKNTNNWQSYSVVLDIK
HCCHHEEEEEECCCCCCHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEC
EGALGIAFGVLLSGEGYVWLDSIRFDEVDEKIPTTDLAENFYETLLEEPVNLQFEELEK
CCCHHHHHHHEECCCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHCC
>Mature Secondary Structure
MHEEYKEIIKKSIEYIENHLHEELTTERVASYSAVSMYHFHRIFQRYVGMSVTDYIRKRR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LTHAAQTLVSTERAVIDIAMQYGFSSQEAFTRAFKRMFQLPPKKYRKYFQSFYIEREGVS
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
MQKGIPKGWILSGSHPAEYEMGLDYEVVHQGKVSAYIKAKENVTHGGFSTLMQMFRADKY
HHHCCCCCEEECCCCCCCCCCCCCHHEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHH
VGKRLRFTAFVKSENVRDWAGLWMRVDGKETEPLAMDNMQNRPIKNTNNWQSYSVVLDIK
HCCHHEEEEEECCCCCCHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEC
EGALGIAFGVLLSGEGYVWLDSIRFDEVDEKIPTTDLAENFYETLLEEPVNLQFEELEK
CCCHHHHHHHEECCCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]