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The map label for this gene is oppA [H]

Identifier: 222093956

GI number: 222093956

Start: 189846

End: 191435

Strand: Direct

Name: oppA [H]

Synonym: BCQ_0212

Alternate gene names: 222093956

Gene position: 189846-191435 (Clockwise)

Preceding gene: 222093955

Following gene: 222093958

Centisome position: 3.64

GC content: 32.45

Gene sequence:

>1590_bases
ATGAAGAAGTTTTTATTATTTGTCATTATGACCGTATTAGCAATTACTTCTGTCGCTTGCGGTAAGAAAGATACTTCAAA
AGCAAGTGCTAGTAAAGGAGACCGTTTTGTAACGAATCTCGGTAGTGATCCTTACACGTTAGATTCAGCGATTTCAACAG
ATAATAACTCTAATTATGTAATTGAGCACTTATTTGCAACTTTGTATAGACAGACAACGGATGGGAAGTTTGAAAAGGAT
TTAGTAGAGAAAGAGGAAGCTGGGGCAGATGGAAAAGAGTATACATTCTATTTGAAAAAAGGATTGAAATGGTCTGATGG
TTCTCCATTAACAGCAAAAGATTTTGAATTTGCTTGGAAGAGAATATTAAATCCTAAAACGGGTTCTATGAATGCAACTG
AACTCTATTTCATTAAAGGTGGAGAAGCATTTAATACGGGGAAAGGTGCAGAAGATGCAGTAGGAATTCAAGCAGTAGAT
GATGTAACTTTAAAGCTACAATTTGAACATCCGGTAACATCTATTAAGCGAACATTAGCCCAGTCGTTATATATTCCACT
TAATAAAAAATCTATTGACGAAAAAGGTAAACTAAAAGTAGATCCAAAAGAATTAATTACAAATGGTCCTTTCACATTGA
AAGAATGGAAGCATAATCAAGCGATTATTTTAGAAAAAAATAAAGAATTCCATGATAAAAAAGTAGCATCAAAAGAAATC
GAATTCCGTATTATTCCTGAAGGTAAAACAGCGTATCAATTATATAAATCTGGAGAATTAGATTTATTATCTAACATACC
AACGGATTTAGTTGAAAAAGAACAAAACAATAAAGAGTTTAAAAAAATGCAAGACTACTCAACTCATATTTACTCATTTA
ATTCAGAGAAACCACCATTTACAAATGCTAAAATTCGTAAAGCCTTTGCATTAGCTGTAGATCGTAAGTTTATCGTAGAG
AAAATATTAAAGAATAATGCAAAAGAAGCATATGGATTTGTTCCAGAAGGAGCAAAAACAGAAGGTGGTCGTGACTTCCG
TAAAGAGAAGGGTGATTATTTTAAATATGATCCTGCGGTAGCTAAGAATCTATTAGAAGAAGGAATGAAGGAAGAAGGAT
GGACTACACTTCCAGAAGTAACGGTGAAATATTCAGATAAGAAAAAAATAGCTGAAACACTTCAAGAAATGTTTAAGAAA
AATCTTGGTGTAGACGTAAAGATAGAAGGTAAAGAGTGGAAAAGTTATATTGATATGTACAAACAAAGTGACTTCCAAAT
CGCATATATGGGATGGGGAGGATCTACATTAGATCCAGCTGCTCAATTAGAAATTTATGCAGGTGATGGACCAAATAACT
ATGCGAAATGGTTTAATAAAGACTTTGATAATTTAATTAATCAAGCAAAATTAGAACAAGATGAAAATAAACGCTTTGAC
TTATTACATCAAGCAGAAGATATTATGTTTACAGAATATCCTTTAATCCCACTTGTATTCCCAACAGACTCTTATTTACA
AAAGTCATCTGTATCTGGATTAGAATACTACGTAGGATCTCAACCAAGTTTACGATATGCTAAGAAATAA

Upstream 100 bases:

>100_bases
TTTGGAAATACGGATGAAGTATTCCGTAATCCACAACATTCTTATACAAAAACATTATTAGCATCTACACCAAAAATTTC
AGGTTAAAGGGGAATGGAAG

Downstream 100 bases:

>100_bases
AATAAAGAAGTAGGCAACTGCCTACTTCTTTATTTTATTTCTCTTTTATATTCTTTTTTCGTTCCATCAGAGAAGACAAC
TTCTAAATCAAATTTTTGAT

Product: oligopeptide ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 529; Mature: 529

Protein sequence:

>529_residues
MKKFLLFVIMTVLAITSVACGKKDTSKASASKGDRFVTNLGSDPYTLDSAISTDNNSNYVIEHLFATLYRQTTDGKFEKD
LVEKEEAGADGKEYTFYLKKGLKWSDGSPLTAKDFEFAWKRILNPKTGSMNATELYFIKGGEAFNTGKGAEDAVGIQAVD
DVTLKLQFEHPVTSIKRTLAQSLYIPLNKKSIDEKGKLKVDPKELITNGPFTLKEWKHNQAIILEKNKEFHDKKVASKEI
EFRIIPEGKTAYQLYKSGELDLLSNIPTDLVEKEQNNKEFKKMQDYSTHIYSFNSEKPPFTNAKIRKAFALAVDRKFIVE
KILKNNAKEAYGFVPEGAKTEGGRDFRKEKGDYFKYDPAVAKNLLEEGMKEEGWTTLPEVTVKYSDKKKIAETLQEMFKK
NLGVDVKIEGKEWKSYIDMYKQSDFQIAYMGWGGSTLDPAAQLEIYAGDGPNNYAKWFNKDFDNLINQAKLEQDENKRFD
LLHQAEDIMFTEYPLIPLVFPTDSYLQKSSVSGLEYYVGSQPSLRYAKK

Sequences:

>Translated_529_residues
MKKFLLFVIMTVLAITSVACGKKDTSKASASKGDRFVTNLGSDPYTLDSAISTDNNSNYVIEHLFATLYRQTTDGKFEKD
LVEKEEAGADGKEYTFYLKKGLKWSDGSPLTAKDFEFAWKRILNPKTGSMNATELYFIKGGEAFNTGKGAEDAVGIQAVD
DVTLKLQFEHPVTSIKRTLAQSLYIPLNKKSIDEKGKLKVDPKELITNGPFTLKEWKHNQAIILEKNKEFHDKKVASKEI
EFRIIPEGKTAYQLYKSGELDLLSNIPTDLVEKEQNNKEFKKMQDYSTHIYSFNSEKPPFTNAKIRKAFALAVDRKFIVE
KILKNNAKEAYGFVPEGAKTEGGRDFRKEKGDYFKYDPAVAKNLLEEGMKEEGWTTLPEVTVKYSDKKKIAETLQEMFKK
NLGVDVKIEGKEWKSYIDMYKQSDFQIAYMGWGGSTLDPAAQLEIYAGDGPNNYAKWFNKDFDNLINQAKLEQDENKRFD
LLHQAEDIMFTEYPLIPLVFPTDSYLQKSSVSGLEYYVGSQPSLRYAKK
>Mature_529_residues
MKKFLLFVIMTVLAITSVACGKKDTSKASASKGDRFVTNLGSDPYTLDSAISTDNNSNYVIEHLFATLYRQTTDGKFEKD
LVEKEEAGADGKEYTFYLKKGLKWSDGSPLTAKDFEFAWKRILNPKTGSMNATELYFIKGGEAFNTGKGAEDAVGIQAVD
DVTLKLQFEHPVTSIKRTLAQSLYIPLNKKSIDEKGKLKVDPKELITNGPFTLKEWKHNQAIILEKNKEFHDKKVASKEI
EFRIIPEGKTAYQLYKSGELDLLSNIPTDLVEKEQNNKEFKKMQDYSTHIYSFNSEKPPFTNAKIRKAFALAVDRKFIVE
KILKNNAKEAYGFVPEGAKTEGGRDFRKEKGDYFKYDPAVAKNLLEEGMKEEGWTTLPEVTVKYSDKKKIAETLQEMFKK
NLGVDVKIEGKEWKSYIDMYKQSDFQIAYMGWGGSTLDPAAQLEIYAGDGPNNYAKWFNKDFDNLINQAKLEQDENKRFD
LLHQAEDIMFTEYPLIPLVFPTDSYLQKSSVSGLEYYVGSQPSLRYAKK

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the binding of dipeptides with high affinity. Is expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789397, Length=521, Percent_Identity=29.9424184261036, Blast_Score=228, Evalue=1e-60,
Organism=Escherichia coli, GI1787495, Length=525, Percent_Identity=28.1904761904762, Blast_Score=214, Evalue=1e-56,
Organism=Escherichia coli, GI87081878, Length=531, Percent_Identity=27.1186440677966, Blast_Score=205, Evalue=6e-54,
Organism=Escherichia coli, GI1789966, Length=445, Percent_Identity=27.8651685393258, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1787762, Length=517, Percent_Identity=25.7253384912959, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787052, Length=503, Percent_Identity=23.6580516898608, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI1787551, Length=522, Percent_Identity=19.5402298850575, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1789887, Length=416, Percent_Identity=22.8365384615385, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 60204; Mature: 60204

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFLLFVIMTVLAITSVACGKKDTSKASASKGDRFVTNLGSDPYTLDSAISTDNNSNYV
CHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCEEECCCCCCEEECCHHCCCCCCCHH
IEHLFATLYRQTTDGKFEKDLVEKEEAGADGKEYTFYLKKGLKWSDGSPLTAKDFEFAWK
HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHH
RILNPKTGSMNATELYFIKGGEAFNTGKGAEDAVGIQAVDDVTLKLQFEHPVTSIKRTLA
HHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCEEEEEEECCCHHHHHHHHH
QSLYIPLNKKSIDEKGKLKVDPKELITNGPFTLKEWKHNQAIILEKNKEFHDKKVASKEI
HHHCCCCCCCCCCCCCCEEECHHHHHCCCCCCHHHCCCCCEEEEECCCCHHHHHHHCCCE
EFRIIPEGKTAYQLYKSGELDLLSNIPTDLVEKEQNNKEFKKMQDYSTHIYSFNSEKPPF
EEEEECCCCHHHHHHCCCCCHHHHCCCHHHHHHHCCCHHHHHHHHHHHEEEEECCCCCCC
TNAKIRKAFALAVDRKFIVEKILKNNAKEAYGFVPEGAKTEGGRDFRKEKGDYFKYDPAV
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHCCCCCEEECHHH
AKNLLEEGMKEEGWTTLPEVTVKYSDKKKIAETLQEMFKKNLGVDVKIEGKEWKSYIDMY
HHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHH
KQSDFQIAYMGWGGSTLDPAAQLEIYAGDGPNNYAKWFNKDFDNLINQAKLEQDENKRFD
HCCCCEEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH
LLHQAEDIMFTEYPLIPLVFPTDSYLQKSSVSGLEYYVGSQPSLRYAKK
HHHHHHHHEEECCCCEEEEECCHHHHHHHCCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure
MKKFLLFVIMTVLAITSVACGKKDTSKASASKGDRFVTNLGSDPYTLDSAISTDNNSNYV
CHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCEEECCCCCCEEECCHHCCCCCCCHH
IEHLFATLYRQTTDGKFEKDLVEKEEAGADGKEYTFYLKKGLKWSDGSPLTAKDFEFAWK
HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHH
RILNPKTGSMNATELYFIKGGEAFNTGKGAEDAVGIQAVDDVTLKLQFEHPVTSIKRTLA
HHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCEEEEEEECCCHHHHHHHHH
QSLYIPLNKKSIDEKGKLKVDPKELITNGPFTLKEWKHNQAIILEKNKEFHDKKVASKEI
HHHCCCCCCCCCCCCCCEEECHHHHHCCCCCCHHHCCCCCEEEEECCCCHHHHHHHCCCE
EFRIIPEGKTAYQLYKSGELDLLSNIPTDLVEKEQNNKEFKKMQDYSTHIYSFNSEKPPF
EEEEECCCCHHHHHHCCCCCHHHHCCCHHHHHHHCCCHHHHHHHHHHHEEEEECCCCCCC
TNAKIRKAFALAVDRKFIVEKILKNNAKEAYGFVPEGAKTEGGRDFRKEKGDYFKYDPAV
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHCCCCCEEECHHH
AKNLLEEGMKEEGWTTLPEVTVKYSDKKKIAETLQEMFKKNLGVDVKIEGKEWKSYIDMY
HHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHH
KQSDFQIAYMGWGGSTLDPAAQLEIYAGDGPNNYAKWFNKDFDNLINQAKLEQDENKRFD
HCCCCEEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH
LLHQAEDIMFTEYPLIPLVFPTDSYLQKSSVSGLEYYVGSQPSLRYAKK
HHHHHHHHEEECCCCEEEEECCHHHHHHHCCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]