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The map label for this gene is nccH [H]

Identifier: 222093937

GI number: 222093937

Start: 171200

End: 171691

Strand: Reverse

Name: nccH [H]

Synonym: BCQ_0193

Alternate gene names: 222093937

Gene position: 171691-171200 (Counterclockwise)

Preceding gene: 222093938

Following gene: 222093936

Centisome position: 3.29

GC content: 29.27

Gene sequence:

>492_bases
ATGGAAAAAGAAAATATATTGACCTCCTATCTTATCAATTTAGGGGAGGAAGTGTTCAAACTATTACTAGCGAAAGGGGC
TATAAAAGAAGACGCAGAAGACATCATTCAAAATACTTTCTATAAAGTATATACGTTGCTAGATGACCTAACAGAGAATA
ACATACGTCCATGGTTTTTTAGGGTTGCATTAAACGAATACATTGACTTGAAGAGAAAAAAAGAGCAGCAAAACATCTAT
TTAACTGAAGAGATTTATTCAAAACTACAATATACAGACCGAGAATTAGATGCTGTTTTAAATAAAGATGAGATTTTCTA
TCTATTAAAAGATATAAAACTAGAATATAAAGAAGCCTTCTTTTTAAAATATTATTATGATTTTTCATATGAAGAAATTG
CCCTAATACTAGATATTCAAGTGAACAGTGTTAAACAAAAATTACATCGTGCACGTAAAACAATTCATTCTACAGTAGGA
GGAAAAACTTAA

Upstream 100 bases:

>100_bases
TGTTATATGCCTTTTCTATTTGTATCAAGAACAAAACTTTCATTTAAGTGTATACATTTATGATTACCTATCCGTTGTAT
AAGTATAGGGAGGAAAAATG

Downstream 100 bases:

>100_bases
TGGATACTTCTTTAAAAGATGCATTAAAAAAAGCTAAAAGGAAACAGTTACTTAAAATCATTATTACTTCTATTATCGTT
GTAATCATGCTGATTCCTAT

Product: RNA polymerase sigma-70 factor, ecf subfamily

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MEKENILTSYLINLGEEVFKLLLAKGAIKEDAEDIIQNTFYKVYTLLDDLTENNIRPWFFRVALNEYIDLKRKKEQQNIY
LTEEIYSKLQYTDRELDAVLNKDEIFYLLKDIKLEYKEAFFLKYYYDFSYEEIALILDIQVNSVKQKLHRARKTIHSTVG
GKT

Sequences:

>Translated_163_residues
MEKENILTSYLINLGEEVFKLLLAKGAIKEDAEDIIQNTFYKVYTLLDDLTENNIRPWFFRVALNEYIDLKRKKEQQNIY
LTEEIYSKLQYTDRELDAVLNKDEIFYLLKDIKLEYKEAFFLKYYYDFSYEEIALILDIQVNSVKQKLHRARKTIHSTVG
GKT
>Mature_163_residues
MEKENILTSYLINLGEEVFKLLLAKGAIKEDAEDIIQNTFYKVYTLLDDLTENNIRPWFFRVALNEYIDLKRKKEQQNIY
LTEEIYSKLQYTDRELDAVLNKDEIFYLLKDIKLEYKEAFFLKYYYDFSYEEIALILDIQVNSVKQKLHRARKTIHSTVG
GKT

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the genes for a membrane-located efflux system that confers resistance to nickel, cobalt and

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19530; Mature: 19530

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKENILTSYLINLGEEVFKLLLAKGAIKEDAEDIIQNTFYKVYTLLDDLTENNIRPWFF
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
RVALNEYIDLKRKKEQQNIYLTEEIYSKLQYTDRELDAVLNKDEIFYLLKDIKLEYKEAF
HHHHHHHHHHHHHHHHCCEEEHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHH
FLKYYYDFSYEEIALILDIQVNSVKQKLHRARKTIHSTVGGKT
HHHHHCCCCHHHEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEKENILTSYLINLGEEVFKLLLAKGAIKEDAEDIIQNTFYKVYTLLDDLTENNIRPWFF
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
RVALNEYIDLKRKKEQQNIYLTEEIYSKLQYTDRELDAVLNKDEIFYLLKDIKLEYKEAF
HHHHHHHHHHHHHHHHCCEEEHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHH
FLKYYYDFSYEEIALILDIQVNSVKQKLHRARKTIHSTVGGKT
HHHHHCCCCHHHEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7961470 [H]