Click here to switch to the map view.

The map label for this gene is secY [H]

Identifier: 222093900

GI number: 222093900

Start: 129963

End: 131264

Strand: Direct

Name: secY [H]

Synonym: BCQ_0143

Alternate gene names: 222093900

Gene position: 129963-131264 (Clockwise)

Preceding gene: 222093899

Following gene: 222093901

Centisome position: 2.49

GC content: 39.32

Gene sequence:

>1302_bases
ATGTTTCGTACAATCTCCAACTTTATGCGCGTTGCTGAGATAAGACGTAAAATATTATTCACTTTAGCGATGTTAATCGT
ATTCAGGATTGGCACGTTTATCCCCGTGCCATTTACAAATGGAGACGTACTGAAGGCACAAGATCAATTAAATGCTTTAG
GTATTCTAAATACATTTGGCGGTGGAGCCTTGAAAAACTTCTCCATCTTTGCGATGGGAATCATGCCGTATATTACAGCA
TCCATCATCGTGCAATTATTGCAGATGGATGTTGTTCCTAAATTTTCGGAATGGGCGAAGCAAGGTGAAATGGGCCGTCG
TAAATTAACGCAATTCACGCGTTATTTTACAATTGTTCTTGCGTTTATTCAGGGGTTTGGTATGTCAATCGGTTTTAACG
GTATGGTAGGTGGACAATTAATTTTGAATCCTGGTTGGAGCACTTATTTATACATTGCTACGGTACTGACTGCTGGTACT
GCATTTTTAATGTGGTTAGGTGAACAGATTACAGCTAAAGGTGTAGGTAATGGTATTTCCATCCTAATCTTTGGTGGTAT
TGCCGCAGCGATCCCAAGTGTTATATCTCAAGTGTATCAGCAACAGTTTCAAAATATCGGAGATCAATTGTTCATGAGTA
TCGTTAAAGTTGCATTGATTTTACTAGCTGTGTTAGCAGTTATTGTGGGTGTTATTTTCATTCAACAGGCTGTTAGAAAG
ATCCCAATTCAATATGCGAAGCGTGTAACAGGAGGAAATGGTGGTTATGCTGGAGCACAAAACACACATTTACCGCTTAA
GGTAAATAGTGCTGGTGTTATTCCAGTAATTTTTGCTGTTTCATTCTTAATTACTCCTCCGACTATTGCGCAGTTCTTCC
CGAAACATGATGTATCGCAGTGGATTATTGCAAACTTTAACTATTCTCACCCAGTGGGAATGATCATATATGTTGCGCTC
ATTGTAGCCTTCACATATTTCTATGCGTTTGTTCAGGTTAATCCAGAGCAAATGTCAGAGAATCTAAACAAACAAGGTGG
ATATGTTCCAGGTATTCGTCCGGGTAAGAATACAGAACAATATCTAACAAAAATCTTGTATCGTTTGACCTTTGTAGGAT
CAATTTTCCTAGCAGCGATTGCAATCTTACCAGTTATCTTTACGAAGCTGGGAAATCTTCCTCCATCTGCACAGATCGGT
GGAACGAGTATGTTAATCGTTGTCGGCGTTGCTTTAGAAACAATGAAGCAACTAGAAAGCCAACTGGTAAAACGCCATTA
CAAAGGGTTTATCAAGCAGTGA

Upstream 100 bases:

>100_bases
GCGGCGCAGTAGAGAAAAAACTAACTGTTAAAGCGCACAAGTTCTCTTCAAGTGCTAAAGAAGCAATTGAAGCAGCTGGC
GGATCAGTTGAGGTGATCTA

Downstream 100 bases:

>100_bases
GTAAGTGGGAAGTATTGTCTTCCCTACATGCTCATGTACTCTGAGGGGGAACAAGGATGAACTTAATTTTAATGGGGCTT
CCTGGTGCTGGTAAAGGTAC

Product: preprotein translocase subunit secy

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MFRTISNFMRVAEIRRKILFTLAMLIVFRIGTFIPVPFTNGDVLKAQDQLNALGILNTFGGGALKNFSIFAMGIMPYITA
SIIVQLLQMDVVPKFSEWAKQGEMGRRKLTQFTRYFTIVLAFIQGFGMSIGFNGMVGGQLILNPGWSTYLYIATVLTAGT
AFLMWLGEQITAKGVGNGISILIFGGIAAAIPSVISQVYQQQFQNIGDQLFMSIVKVALILLAVLAVIVGVIFIQQAVRK
IPIQYAKRVTGGNGGYAGAQNTHLPLKVNSAGVIPVIFAVSFLITPPTIAQFFPKHDVSQWIIANFNYSHPVGMIIYVAL
IVAFTYFYAFVQVNPEQMSENLNKQGGYVPGIRPGKNTEQYLTKILYRLTFVGSIFLAAIAILPVIFTKLGNLPPSAQIG
GTSMLIVVGVALETMKQLESQLVKRHYKGFIKQ

Sequences:

>Translated_433_residues
MFRTISNFMRVAEIRRKILFTLAMLIVFRIGTFIPVPFTNGDVLKAQDQLNALGILNTFGGGALKNFSIFAMGIMPYITA
SIIVQLLQMDVVPKFSEWAKQGEMGRRKLTQFTRYFTIVLAFIQGFGMSIGFNGMVGGQLILNPGWSTYLYIATVLTAGT
AFLMWLGEQITAKGVGNGISILIFGGIAAAIPSVISQVYQQQFQNIGDQLFMSIVKVALILLAVLAVIVGVIFIQQAVRK
IPIQYAKRVTGGNGGYAGAQNTHLPLKVNSAGVIPVIFAVSFLITPPTIAQFFPKHDVSQWIIANFNYSHPVGMIIYVAL
IVAFTYFYAFVQVNPEQMSENLNKQGGYVPGIRPGKNTEQYLTKILYRLTFVGSIFLAAIAILPVIFTKLGNLPPSAQIG
GTSMLIVVGVALETMKQLESQLVKRHYKGFIKQ
>Mature_433_residues
MFRTISNFMRVAEIRRKILFTLAMLIVFRIGTFIPVPFTNGDVLKAQDQLNALGILNTFGGGALKNFSIFAMGIMPYITA
SIIVQLLQMDVVPKFSEWAKQGEMGRRKLTQFTRYFTIVLAFIQGFGMSIGFNGMVGGQLILNPGWSTYLYIATVLTAGT
AFLMWLGEQITAKGVGNGISILIFGGIAAAIPSVISQVYQQQFQNIGDQLFMSIVKVALILLAVLAVIVGVIFIQQAVRK
IPIQYAKRVTGGNGGYAGAQNTHLPLKVNSAGVIPVIFAVSFLITPPTIAQFFPKHDVSQWIIANFNYSHPVGMIIYVAL
IVAFTYFYAFVQVNPEQMSENLNKQGGYVPGIRPGKNTEQYLTKILYRLTFVGSIFLAAIAILPVIFTKLGNLPPSAQIG
GTSMLIVVGVALETMKQLESQLVKRHYKGFIKQ

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=430, Percent_Identity=43.0232558139535, Blast_Score=289, Evalue=2e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 47515; Mature: 47515

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1435726 [H]