| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221636303
Identifier: 221636303
GI number: 221636303
Start: 878621
End: 879880
Strand: Reverse
Name: 221636303
Synonym: trd_A0897
Alternate gene names: NA
Gene position: 879880-878621 (Counterclockwise)
Preceding gene: 221636305
Following gene: 221636302
Centisome position: 95.87
GC content: 66.03
Gene sequence:
>1260_bases ATGGCTGACCGCGGAGCCGCGACGACGATCGAACCGCGCCGTGTGACCGATGGTGCGGCTCGTCTGCTCGACTCGCTTCT CCGTTACCGCGATTACCGGCTACTCTGGACATCGAGCCTCCTCACCCAGATCGCTCAGTGGATGCTGCAAGTCGCGAGCG GGTGGCTCATGCTCGAGCTCACCAACTCGGCATTGTGGGTGGGTCTGCTCGGTTTCGCTGGCGGGCTTCCGTTCCTGCTC GTCGCTGCACCAGCCGGCACGCTGGCTGAGCAAATCGATCGCCGACTGATTCTCCTCGCTTGCCAAACAGGAGCCCTCAC GGTCAGTTCCCTACTGGCCTTTCTCGTTCTGAGCGGCCAGGCCACCCCACTCGCGCTCCTGATCGCGACAGTACTCAACG GGGCCCTCCTGGCAGCCAACAACGCGACGCGTCAGGCTGCGCTTCCCAGCTACGTTCCCCGTGCCAGCATCCCCAACGCA GTGGCACTGCTCTCGGCGGGAATGAACACGACGCGAATCGTCGGGCCGTCGCTCGCTGGCCCACTGGTCGCGACGCTCGG AGTCGGGGGCACGCTCCTCGTCCAGGCAGGTTGTCTCGTGCTCGCCTTGCTCAACACGGCGCGCCTCCCGGCGACGCCTC CGGCGCGTCCGGTCTGCGGTTCCTTCTTCCGAACACTGGTGGAGGGGGTGAGCTACGTTCGCCGGGTGCCGGTCGTCCTC GCCCTTTTGCTGCTGGCCAGCGTGCCCACCCTTCTGGTGTTTCCCTATCTGCAGCTCCTACCCGTCTTTGCGCGAGATGT TTTTCACCTCGGGCCGAGCGGGCTCGGTCTGCTCTACACCGTCGGTGGAGCGGGTGCCTTGACCGGTTCGCTCTTCGTCG CGGGGTTGCAGCGAGCCCGCCACCGTGGCTTCCTGATGGTGGCGGTCATCGTGATCTACGGTGGCGTCATCGCGACCTTT GCCATGACGCGCTGGTTACCGCTCGTGCTTATCTGCCTCTTCGCTGGTGGCTTTCTCGGGGCGAGCTACATGGCGCTCAA TAACGCCCTCCTGCACCTCGCCATCGATGACGAGGTGCGGGGGCGCGTGATGGGGCTCTATATGATCACCTGGGGTTTCA TGCCCCTCGGTGCGCTCCCGATGGGCGCGCTCGGTGACGCCATCGGTGTGCCGGCTGCCGTGCTCGCCGGTGCGGTCGCC AGCTCACTCCTCGCCTTGCTCGTCGCTTGGCGCGTTCCGGCGCTCCTCCGCCTCCCCTGA
Upstream 100 bases:
>100_bases GCGTTGCGGGTGGAGACGCTCACCCGGACACGGGTGCGGAAGGTGGAATGGACGACTTGCTGTCGTCCGGCCTCGGGAGT ATGGTTCGGCAGGGGGTCGG
Downstream 100 bases:
>100_bases GGGTGCCGTCACGATCGGTTGCCCTGGCGTACCGAGTCCCAAGCGTTCCTCGAGATAGCTGCGTAGTTCCGATTCAGCTC GAGCAGGGACTTCCTCGGTC
Product: major facilitator superfamily MFS_1
Products: NA
Alternate protein names: Facilitator Transporter; Transporter Facilitator Family; Facilitator Superfamily Transporter; Integral Membrane Efflux Protein; Macrolide-Efflux Protein; Permease Of Facilitator Superfamily; Facilitator Superfamily Permease; Permeases Of Facilitator Superfamily
Number of amino acids: Translated: 419; Mature: 418
Protein sequence:
>419_residues MADRGAATTIEPRRVTDGAARLLDSLLRYRDYRLLWTSSLLTQIAQWMLQVASGWLMLELTNSALWVGLLGFAGGLPFLL VAAPAGTLAEQIDRRLILLACQTGALTVSSLLAFLVLSGQATPLALLIATVLNGALLAANNATRQAALPSYVPRASIPNA VALLSAGMNTTRIVGPSLAGPLVATLGVGGTLLVQAGCLVLALLNTARLPATPPARPVCGSFFRTLVEGVSYVRRVPVVL ALLLLASVPTLLVFPYLQLLPVFARDVFHLGPSGLGLLYTVGGAGALTGSLFVAGLQRARHRGFLMVAVIVIYGGVIATF AMTRWLPLVLICLFAGGFLGASYMALNNALLHLAIDDEVRGRVMGLYMITWGFMPLGALPMGALGDAIGVPAAVLAGAVA SSLLALLVAWRVPALLRLP
Sequences:
>Translated_419_residues MADRGAATTIEPRRVTDGAARLLDSLLRYRDYRLLWTSSLLTQIAQWMLQVASGWLMLELTNSALWVGLLGFAGGLPFLL VAAPAGTLAEQIDRRLILLACQTGALTVSSLLAFLVLSGQATPLALLIATVLNGALLAANNATRQAALPSYVPRASIPNA VALLSAGMNTTRIVGPSLAGPLVATLGVGGTLLVQAGCLVLALLNTARLPATPPARPVCGSFFRTLVEGVSYVRRVPVVL ALLLLASVPTLLVFPYLQLLPVFARDVFHLGPSGLGLLYTVGGAGALTGSLFVAGLQRARHRGFLMVAVIVIYGGVIATF AMTRWLPLVLICLFAGGFLGASYMALNNALLHLAIDDEVRGRVMGLYMITWGFMPLGALPMGALGDAIGVPAAVLAGAVA SSLLALLVAWRVPALLRLP >Mature_418_residues ADRGAATTIEPRRVTDGAARLLDSLLRYRDYRLLWTSSLLTQIAQWMLQVASGWLMLELTNSALWVGLLGFAGGLPFLLV AAPAGTLAEQIDRRLILLACQTGALTVSSLLAFLVLSGQATPLALLIATVLNGALLAANNATRQAALPSYVPRASIPNAV ALLSAGMNTTRIVGPSLAGPLVATLGVGGTLLVQAGCLVLALLNTARLPATPPARPVCGSFFRTLVEGVSYVRRVPVVLA LLLLASVPTLLVFPYLQLLPVFARDVFHLGPSGLGLLYTVGGAGALTGSLFVAGLQRARHRGFLMVAVIVIYGGVIATFA MTRWLPLVLICLFAGGFLGASYMALNNALLHLAIDDEVRGRVMGLYMITWGFMPLGALPMGALGDAIGVPAAVLAGAVAS SLLALLVAWRVPALLRLP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43754; Mature: 43623
Theoretical pI: Translated: 10.57; Mature: 10.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADRGAATTIEPRRVTDGAARLLDSLLRYRDYRLLWTSSLLTQIAQWMLQVASGWLMLEL CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE TNSALWVGLLGFAGGLPFLLVAAPAGTLAEQIDRRLILLACQTGALTVSSLLAFLVLSGQ CCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCC ATPLALLIATVLNGALLAANNATRQAALPSYVPRASIPNAVALLSAGMNTTRIVGPSLAG CCHHHHHHHHHHCCCEEECCCCHHHHCCCCCCCCCCCCHHHHHHHCCCCCCEECCCCHHH PLVATLGVGGTLLVQAGCLVLALLNTARLPATPPARPVCGSFFRTLVEGVSYVRRVPVVL HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH ALLLLASVPTLLVFPYLQLLPVFARDVFHLGPSGLGLLYTVGGAGALTGSLFVAGLQRAR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH HRGFLMVAVIVIYGGVIATFAMTRWLPLVLICLFAGGFLGASYMALNNALLHLAIDDEVR HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHH GRVMGLYMITWGFMPLGALPMGALGDAIGVPAAVLAGAVASSLLALLVAWRVPALLRLP HHHHHHHHHHHHHHHHCCCCCHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCC >Mature Secondary Structure ADRGAATTIEPRRVTDGAARLLDSLLRYRDYRLLWTSSLLTQIAQWMLQVASGWLMLEL CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE TNSALWVGLLGFAGGLPFLLVAAPAGTLAEQIDRRLILLACQTGALTVSSLLAFLVLSGQ CCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCC ATPLALLIATVLNGALLAANNATRQAALPSYVPRASIPNAVALLSAGMNTTRIVGPSLAG CCHHHHHHHHHHCCCEEECCCCHHHHCCCCCCCCCCCCHHHHHHHCCCCCCEECCCCHHH PLVATLGVGGTLLVQAGCLVLALLNTARLPATPPARPVCGSFFRTLVEGVSYVRRVPVVL HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH ALLLLASVPTLLVFPYLQLLPVFARDVFHLGPSGLGLLYTVGGAGALTGSLFVAGLQRAR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH HRGFLMVAVIVIYGGVIATFAMTRWLPLVLICLFAGGFLGASYMALNNALLHLAIDDEVR HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHH GRVMGLYMITWGFMPLGALPMGALGDAIGVPAAVLAGAVASSLLALLVAWRVPALLRLP HHHHHHHHHHHHHHHHCCCCCHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA