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The map label for this gene is yjiR [C]

Identifier: 221636301

GI number: 221636301

Start: 876462

End: 877679

Strand: Reverse

Name: yjiR [C]

Synonym: trd_A0895

Alternate gene names: 221636301

Gene position: 877679-876462 (Counterclockwise)

Preceding gene: 221636302

Following gene: 221636299

Centisome position: 95.64

GC content: 65.52

Gene sequence:

>1218_bases
ATGGACGAGCGCTGGCAGGCGAGGTGGTCGAGGAGAGGGCGGATCGCCGCAGCAGCCGAGCGGCCACCGCGGGTACCCCC
GGAAGGGATGATCTCGTTCGTCTACGGTGATCCGGATTGGGAGACGCTTCCGCTCGATGACATGGCTCTCGCAGCGGAGT
TTCTGGCCGAGAACCAGCGGCGGGACGCGCTCGGCTATCAGAACCTGATCCGCCCGGACGAGTTGAACGAGGCGCTCGCC
GAGAAACTCGCTCGTGATCAGGGCATGCAGGTTGCACCCGACCAGATCCTCGTCACGCTCGGCTCCAGCAATGGCCTCGG
TATCATCTGCGACGCGCTGCTCGATCCCGGTGACGTGGTGCTGATCGATGCCCCGGCGTGGATGGGGGCGACCAGCATGT
TCAAGCTGGCCGGGGCTGAATTGGTCGGTATCCCGATCGACGAACACGGAATCGATCCGGACGGGGTTGCTGCTGCACTC
GATCGACTGGAGCGCGAGGGGCGGCGTCCCAAGTTTCTCTACACGCTGCCGACCTTCCAAAATCCGGCTGGCGTGGAAAC
CTCGCTCGAGCGCCGACAGGCTCTGGCTCGCCTGGCTGACGAGCGGGGCTTGCTCATCATCGAAGACGATGCCTATTACG
AGCTTCGCTTCCGCGGAGAGTACCCACCGACCATTTACAGCTTGGCTGCACCAGGAAACGTGTTGTACTGCGGGACGCTC
TCCAAGACGATCGCGGCTGGACTCCGATTGGGCTACGTGGTCGGTCCAGCGCCCATCGTGGCGACACTCGCCCGAGCGCG
GATCGATGCGCTCCGGAACAGCTTCACGGCAGCGCTGGCTGACTGGTACCTGCGCACTGGCCGCTACCACGCGCACGTTG
CCGAGTTGCGTCGGCTGTACAGAGAAAAGTGCGAGCGCATGCTGGCGGCCCTGGAGCGGGAGATGCCGGAAGGGGTGTGC
TGGACGCGTCCGAACGGCGGTTTCTTCATCTGGCTCACTCTGCCGGAAGGCTTGAGCGCGACCGCGCTCCTCTCGGCCTG
CCGCGAGCGACGGGTCGATTTCATCCCCGGCCCGGCCTTCTATGGCGACGGGAGTGGGGATCAACACCTGCGCCTCTCGT
TCAGTGCGGTGACGCTCGAGCAGATCGACGAGGGGATCGCCCGGATGGCCGCTGTCGTGCGCGAGGCGCTGGCTGGCGAA
CTCGCGGCTGCCCGCTAG

Upstream 100 bases:

>100_bases
TCGCTTCCCACCGTCTCGCGAACCGCCGCTGCTCTCCACTATACTGAGACAGCGGCGCGCTGCCGCGCAGCATACCACGT
GCAGGGAAGGAGCCGTTGCG

Downstream 100 bases:

>100_bases
TGCTCCAGCACGACACTCCGTGGTGGGGTATCAGGGGGCGCGGCGGCGGGAAGATCGCCGGCGCGATTGCCCGGCGGTTG
GAGGCGCAGTGGAGACTGCG

Product: aminotransferase, classes I and II

Products: NA

Alternate protein names: AspB-1 [H]

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MDERWQARWSRRGRIAAAAERPPRVPPEGMISFVYGDPDWETLPLDDMALAAEFLAENQRRDALGYQNLIRPDELNEALA
EKLARDQGMQVAPDQILVTLGSSNGLGIICDALLDPGDVVLIDAPAWMGATSMFKLAGAELVGIPIDEHGIDPDGVAAAL
DRLEREGRRPKFLYTLPTFQNPAGVETSLERRQALARLADERGLLIIEDDAYYELRFRGEYPPTIYSLAAPGNVLYCGTL
SKTIAAGLRLGYVVGPAPIVATLARARIDALRNSFTAALADWYLRTGRYHAHVAELRRLYREKCERMLAALEREMPEGVC
WTRPNGGFFIWLTLPEGLSATALLSACRERRVDFIPGPAFYGDGSGDQHLRLSFSAVTLEQIDEGIARMAAVVREALAGE
LAAAR

Sequences:

>Translated_405_residues
MDERWQARWSRRGRIAAAAERPPRVPPEGMISFVYGDPDWETLPLDDMALAAEFLAENQRRDALGYQNLIRPDELNEALA
EKLARDQGMQVAPDQILVTLGSSNGLGIICDALLDPGDVVLIDAPAWMGATSMFKLAGAELVGIPIDEHGIDPDGVAAAL
DRLEREGRRPKFLYTLPTFQNPAGVETSLERRQALARLADERGLLIIEDDAYYELRFRGEYPPTIYSLAAPGNVLYCGTL
SKTIAAGLRLGYVVGPAPIVATLARARIDALRNSFTAALADWYLRTGRYHAHVAELRRLYREKCERMLAALEREMPEGVC
WTRPNGGFFIWLTLPEGLSATALLSACRERRVDFIPGPAFYGDGSGDQHLRLSFSAVTLEQIDEGIARMAAVVREALAGE
LAAAR
>Mature_405_residues
MDERWQARWSRRGRIAAAAERPPRVPPEGMISFVYGDPDWETLPLDDMALAAEFLAENQRRDALGYQNLIRPDELNEALA
EKLARDQGMQVAPDQILVTLGSSNGLGIICDALLDPGDVVLIDAPAWMGATSMFKLAGAELVGIPIDEHGIDPDGVAAAL
DRLEREGRRPKFLYTLPTFQNPAGVETSLERRQALARLADERGLLIIEDDAYYELRFRGEYPPTIYSLAAPGNVLYCGTL
SKTIAAGLRLGYVVGPAPIVATLARARIDALRNSFTAALADWYLRTGRYHAHVAELRRLYREKCERMLAALEREMPEGVC
WTRPNGGFFIWLTLPEGLSATALLSACRERRVDFIPGPAFYGDGSGDQHLRLSFSAVTLEQIDEGIARMAAVVREALAGE
LAAAR

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=397, Percent_Identity=29.9748110831234, Blast_Score=169, Evalue=6e-42,
Organism=Homo sapiens, GI33469970, Length=397, Percent_Identity=29.9748110831234, Blast_Score=169, Evalue=6e-42,
Organism=Escherichia coli, GI1790797, Length=372, Percent_Identity=27.4193548387097, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1787710, Length=327, Percent_Identity=28.4403669724771, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1788722, Length=387, Percent_Identity=26.0981912144703, Blast_Score=91, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6321236, Length=363, Percent_Identity=25.3443526170799, Blast_Score=100, Evalue=8e-22,
Organism=Saccharomyces cerevisiae, GI6321000, Length=321, Percent_Identity=29.9065420560748, Blast_Score=97, Evalue=6e-21,
Organism=Drosophila melanogaster, GI21356535, Length=385, Percent_Identity=24.9350649350649, Blast_Score=127, Evalue=1e-29,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: NA

Molecular weight: Translated: 44592; Mature: 44592

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDERWQARWSRRGRIAAAAERPPRVPPEGMISFVYGDPDWETLPLDDMALAAEFLAENQR
CCCHHHHHHHCCCCEEECCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCH
RDALGYQNLIRPDELNEALAEKLARDQGMQVAPDQILVTLGSSNGLGIICDALLDPGDVV
HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEHHHCCCCCEE
LIDAPAWMGATSMFKLAGAELVGIPIDEHGIDPDGVAAALDRLEREGRRPKFLYTLPTFQ
EEECCCCCCHHHHHHHCCCEEEECCCHHCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC
NPAGVETSLERRQALARLADERGLLIIEDDAYYELRFRGEYPPTIYSLAAPGNVLYCGTL
CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCCCEEEECCCCCEEEECCH
SKTIAAGLRLGYVVGPAPIVATLARARIDALRNSFTAALADWYLRTGRYHAHVAELRRLY
HHHHHHHHHHCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
REKCERMLAALEREMPEGVCWTRPNGGFFIWLTLPEGLSATALLSACRERRVDFIPGPAF
HHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCC
YGDGSGDQHLRLSFSAVTLEQIDEGIARMAAVVREALAGELAAAR
CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDERWQARWSRRGRIAAAAERPPRVPPEGMISFVYGDPDWETLPLDDMALAAEFLAENQR
CCCHHHHHHHCCCCEEECCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCH
RDALGYQNLIRPDELNEALAEKLARDQGMQVAPDQILVTLGSSNGLGIICDALLDPGDVV
HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEHHHCCCCCEE
LIDAPAWMGATSMFKLAGAELVGIPIDEHGIDPDGVAAALDRLEREGRRPKFLYTLPTFQ
EEECCCCCCHHHHHHHCCCEEEECCCHHCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC
NPAGVETSLERRQALARLADERGLLIIEDDAYYELRFRGEYPPTIYSLAAPGNVLYCGTL
CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCCCEEEECCCCCEEEECCH
SKTIAAGLRLGYVVGPAPIVATLARARIDALRNSFTAALADWYLRTGRYHAHVAELRRLY
HHHHHHHHHHCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
REKCERMLAALEREMPEGVCWTRPNGGFFIWLTLPEGLSATALLSACRERRVDFIPGPAF
HHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCC
YGDGSGDQHLRLSFSAVTLEQIDEGIARMAAVVREALAGELAAAR
CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]