Definition Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence.
Accession NC_011961
Length 917,738

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The map label for this gene is 221636296

Identifier: 221636296

GI number: 221636296

Start: 872093

End: 872713

Strand: Reverse

Name: 221636296

Synonym: trd_A0890

Alternate gene names: NA

Gene position: 872713-872093 (Counterclockwise)

Preceding gene: 221636297

Following gene: 221636295

Centisome position: 95.09

GC content: 61.67

Gene sequence:

>621_bases
ATGGCAGTGACGGCTCCGGTCTCGACCGTTCCACAGCTTCCTGGCCCCACGCGTCGACGCCGCTCGCGTGTCCTCTTTTG
GCCACTGATCGCGCTGGCGCAGGTGGTACGGGTTGTCCTCCGTAAGACGCTTTGGGTGACGATCCGGGTGATCCGACTCG
CCTGGCGCCATCTTCTGGTTACCCTGCTCATCGCGTTAGGTGGGTACTATGCCTATCGCGCGTTGGTACCTCAGCCGGTG
AGTCAGCCGCGAGAATCGCCAGTGCAGGCGGCGCCGCTCATCGCGCCACCCGCCAGTGTGCGAGCCTATCTCGAGGCACA
ACGCAACTTCGACGCCGAGCGGATGTGGCAGACCTTGAGTCCGGAATCGAAAGCACGCCGCTTGGCCAGTGGCGAGAGCC
TGGCAACGTTTCGGCAATCAGTGCAACTCCTGCAACAGCAGGGATTCCGCTTCGGAGAGAGCACCTACGTGGGAGGCTAC
AAGTTGCCCGATGGGCAGGCCTACTATTTTTACGTGACCGAAGTGCGGAACGCCAACGATCAGCGCGGTATGGTCTATCA
GATCTTCTGGGTCAGCGCCGATGGCCTCATCTTCACTGTCGACACGCCGCAACTCCAGTGA

Upstream 100 bases:

>100_bases
CCGCGTGTGACTCTCCGCTCGTGCTGTCCGTGCTCTGCCATTGATGCTACACTCTCGACAGGCGCTGTTCTGCTCGAGTG
ACGAGGAAACGATTTCCGCG

Downstream 100 bases:

>100_bases
GGGTGGTAGCCCATGACAGGACAAACACAGACCATTCCCAAGCCGCGCGAGCGACGTCGGTACCGGGACGAGCTCGAACA
GCAGATCGACGACGTGATCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MAVTAPVSTVPQLPGPTRRRRSRVLFWPLIALAQVVRVVLRKTLWVTIRVIRLAWRHLLVTLLIALGGYYAYRALVPQPV
SQPRESPVQAAPLIAPPASVRAYLEAQRNFDAERMWQTLSPESKARRLASGESLATFRQSVQLLQQQGFRFGESTYVGGY
KLPDGQAYYFYVTEVRNANDQRGMVYQIFWVSADGLIFTVDTPQLQ

Sequences:

>Translated_206_residues
MAVTAPVSTVPQLPGPTRRRRSRVLFWPLIALAQVVRVVLRKTLWVTIRVIRLAWRHLLVTLLIALGGYYAYRALVPQPV
SQPRESPVQAAPLIAPPASVRAYLEAQRNFDAERMWQTLSPESKARRLASGESLATFRQSVQLLQQQGFRFGESTYVGGY
KLPDGQAYYFYVTEVRNANDQRGMVYQIFWVSADGLIFTVDTPQLQ
>Mature_205_residues
AVTAPVSTVPQLPGPTRRRRSRVLFWPLIALAQVVRVVLRKTLWVTIRVIRLAWRHLLVTLLIALGGYYAYRALVPQPVS
QPRESPVQAAPLIAPPASVRAYLEAQRNFDAERMWQTLSPESKARRLASGESLATFRQSVQLLQQQGFRFGESTYVGGYK
LPDGQAYYFYVTEVRNANDQRGMVYQIFWVSADGLIFTVDTPQLQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23364; Mature: 23233

Theoretical pI: Translated: 10.93; Mature: 10.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVTAPVSTVPQLPGPTRRRRSRVLFWPLIALAQVVRVVLRKTLWVTIRVIRLAWRHLLV
CCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLLIALGGYYAYRALVPQPVSQPRESPVQAAPLIAPPASVRAYLEAQRNFDAERMWQTLS
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCC
PESKARRLASGESLATFRQSVQLLQQQGFRFGESTYVGGYKLPDGQAYYFYVTEVRNAND
CHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEECCEECCCCCEEEEEEEEECCCCC
QRGMVYQIFWVSADGLIFTVDTPQLQ
CCCEEEEEEEEECCCEEEEECCCCCC
>Mature Secondary Structure 
AVTAPVSTVPQLPGPTRRRRSRVLFWPLIALAQVVRVVLRKTLWVTIRVIRLAWRHLLV
CCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLLIALGGYYAYRALVPQPVSQPRESPVQAAPLIAPPASVRAYLEAQRNFDAERMWQTLS
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCC
PESKARRLASGESLATFRQSVQLLQQQGFRFGESTYVGGYKLPDGQAYYFYVTEVRNAND
CHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEECCEECCCCCEEEEEEEEECCCCC
QRGMVYQIFWVSADGLIFTVDTPQLQ
CCCEEEEEEEEECCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA