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The map label for this gene is xerC [H]

Identifier: 221636287

GI number: 221636287

Start: 864236

End: 865240

Strand: Reverse

Name: xerC [H]

Synonym: trd_A0881

Alternate gene names: 221636287

Gene position: 865240-864236 (Counterclockwise)

Preceding gene: 221636289

Following gene: 221636286

Centisome position: 94.28

GC content: 64.98

Gene sequence:

>1005_bases
ATGGGCATCACGATCGAAGAGGCGGTCGCTCGCTTTCTCGATGATCTGCGGCTTTCGCCGCGCAGCCGTACGACCTACGC
GTTGGCGTTGCGGAAGTTTCTCCGTCACCTGGAGGAGGTGCAAGGGCTTTCGCCCGAGGCAGCGGTGAGCGAGCTCCGCG
AGGAGCATGCGATCGCGTTCTTGCGCGATCTCGTACCCGACGACATCAAAACGCCCGAGCAAGTCTCGCGGATGCGGACG
GCCCAGACGACGTTCGCAGCGGTGCGCAAGTTCTACGGTTACCTGATTTCGTTCGATCTCCACACCGGACTTTCGACGGA
GAAACTGCGCGTGCGGGCCGCAACCGTCCTTCCGCGGTTCACTCCCCCACCGCCCGATGTCCGCACGAGCGATCTGGAAC
GGATCGTCGACCATGTCCGCCGGCTGGCTCCGGAGAGCGATCCGATCAAGGAGCTCCGCCGACTCAAGGTGAGGGCATTG
ATCTTGTTCCTTTTCCGCACGGGGGTACGGGTCTCGGAACTTTGTGCGTTGCGCCGTCAAGACATCGACCTGGAAACCGG
CACAGCGCGGATCTACCGGGCCAAGGGTGGCAAGAGCCGTACCGTACACTTCGACAGCGAGACCGCCGAGGCGCTGGCAG
CGTACTGGCGGGCGCGCGGTGACAGCGGACGGGGGGTGAATGCGTTTCCGGCGTTCAGTGGGCGAGATCGCCCGGGTCAA
CCGGGGAAGGCGATCGCCCCGCGGACGGTGCAGGCGCTGGTGAGTCGGCTCAGCGAGGAGGCCGGCGTGGAGTTCGCAGT
GACTCCTCATTCCTTCCGACACGGACTGGCGACCGAGCTCGTACGGAGACGGGTGAGAGAATCGACCGTCCAGACGATTC
TCGGCCATGCTTCTCCGGTGACGACGCGGATCTACGTGCACCTGACGGCGCAGGAAGCAGCGGAGGAATATCAGGCGGCG
TTCGGTCGCTACCGGCGACCGGGCGGTAGGGGAGCGGGTCGCTGA

Upstream 100 bases:

>100_bases
CACCGAGTCGATCGACGTGTCTAGAGGGCATCGCCGTGAGACCGATGGTGATATCGCGTCCGTACGCTATAATCTCGACG
CGATGGGGAGGCGCGAGCCC

Downstream 100 bases:

>100_bases
TGGACAAAGCACTTCCGGTACTGCTCTTGGCGATGGTCCTCCTGGGCGCATGCACTGCTCCGGTGGTGCAGAGCCAGCGG
CCATTGCCGACACCGACACC

Product: tyrosine recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MGITIEEAVARFLDDLRLSPRSRTTYALALRKFLRHLEEVQGLSPEAAVSELREEHAIAFLRDLVPDDIKTPEQVSRMRT
AQTTFAAVRKFYGYLISFDLHTGLSTEKLRVRAATVLPRFTPPPPDVRTSDLERIVDHVRRLAPESDPIKELRRLKVRAL
ILFLFRTGVRVSELCALRRQDIDLETGTARIYRAKGGKSRTVHFDSETAEALAAYWRARGDSGRGVNAFPAFSGRDRPGQ
PGKAIAPRTVQALVSRLSEEAGVEFAVTPHSFRHGLATELVRRRVRESTVQTILGHASPVTTRIYVHLTAQEAAEEYQAA
FGRYRRPGGRGAGR

Sequences:

>Translated_334_residues
MGITIEEAVARFLDDLRLSPRSRTTYALALRKFLRHLEEVQGLSPEAAVSELREEHAIAFLRDLVPDDIKTPEQVSRMRT
AQTTFAAVRKFYGYLISFDLHTGLSTEKLRVRAATVLPRFTPPPPDVRTSDLERIVDHVRRLAPESDPIKELRRLKVRAL
ILFLFRTGVRVSELCALRRQDIDLETGTARIYRAKGGKSRTVHFDSETAEALAAYWRARGDSGRGVNAFPAFSGRDRPGQ
PGKAIAPRTVQALVSRLSEEAGVEFAVTPHSFRHGLATELVRRRVRESTVQTILGHASPVTTRIYVHLTAQEAAEEYQAA
FGRYRRPGGRGAGR
>Mature_333_residues
GITIEEAVARFLDDLRLSPRSRTTYALALRKFLRHLEEVQGLSPEAAVSELREEHAIAFLRDLVPDDIKTPEQVSRMRTA
QTTFAAVRKFYGYLISFDLHTGLSTEKLRVRAATVLPRFTPPPPDVRTSDLERIVDHVRRLAPESDPIKELRRLKVRALI
LFLFRTGVRVSELCALRRQDIDLETGTARIYRAKGGKSRTVHFDSETAEALAAYWRARGDSGRGVNAFPAFSGRDRPGQP
GKAIAPRTVQALVSRLSEEAGVEFAVTPHSFRHGLATELVRRRVRESTVQTILGHASPVTTRIYVHLTAQEAAEEYQAAF
GRYRRPGGRGAGR

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=245, Percent_Identity=28.9795918367347, Blast_Score=88, Evalue=9e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37447; Mature: 37316

Theoretical pI: Translated: 10.90; Mature: 10.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGITIEEAVARFLDDLRLSPRSRTTYALALRKFLRHLEEVQGLSPEAAVSELREEHAIAF
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LRDLVPDDIKTPEQVSRMRTAQTTFAAVRKFYGYLISFDLHTGLSTEKLRVRAATVLPRF
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHCCCCHHHHHHHHHHHCCCC
TPPPPDVRTSDLERIVDHVRRLAPESDPIKELRRLKVRALILFLFRTGVRVSELCALRRQ
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
DIDLETGTARIYRAKGGKSRTVHFDSETAEALAAYWRARGDSGRGVNAFPAFSGRDRPGQ
CCCCCCCCEEEEECCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PGKAIAPRTVQALVSRLSEEAGVEFAVTPHSFRHGLATELVRRRVRESTVQTILGHASPV
CCCCCCHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TTRIYVHLTAQEAAEEYQAAFGRYRRPGGRGAGR
EEEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
GITIEEAVARFLDDLRLSPRSRTTYALALRKFLRHLEEVQGLSPEAAVSELREEHAIAF
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LRDLVPDDIKTPEQVSRMRTAQTTFAAVRKFYGYLISFDLHTGLSTEKLRVRAATVLPRF
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHCCCCHHHHHHHHHHHCCCC
TPPPPDVRTSDLERIVDHVRRLAPESDPIKELRRLKVRALILFLFRTGVRVSELCALRRQ
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
DIDLETGTARIYRAKGGKSRTVHFDSETAEALAAYWRARGDSGRGVNAFPAFSGRDRPGQ
CCCCCCCCEEEEECCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PGKAIAPRTVQALVSRLSEEAGVEFAVTPHSFRHGLATELVRRRVRESTVQTILGHASPV
CCCCCCHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TTRIYVHLTAQEAAEEYQAAFGRYRRPGGRGAGR
EEEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA