Definition Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence.
Accession NC_011961
Length 917,738

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The map label for this gene is 221636265

Identifier: 221636265

GI number: 221636265

Start: 842362

End: 842835

Strand: Reverse

Name: 221636265

Synonym: trd_A0858

Alternate gene names: NA

Gene position: 842835-842362 (Counterclockwise)

Preceding gene: 221636267

Following gene: 221636263

Centisome position: 91.84

GC content: 66.24

Gene sequence:

>474_bases
ATGGATGCGATCCTGCGCGTGCTGATCGCGGGGCTGGTCGCCACGATCGTGCTGACCGTCGTGTTGCGGGGAAGCCAACT
GATGGGGCTGACGCGGATGGATCTCCCGCTGATCCTCGGGCTGTGGGTGACGCGCGATCGAGAACGTGCCAAGTTCGTGG
GCATTTTCGTGCACATCCTCGTGGGTTGGCCACTGGCGGCCATCTATGCTGGTGTCTTCTGGCTTCTGGGGGGTGCTAGC
TGGTGGTTGGGTGCTTTGCTGGGGCTCGGACATGGCGCGTTCGTGCTGCTGGTGGTGCTGCCGGGCCTCCCTGGAGTGCA
CCCGCGGATGGCGAGCGAGCGGACCGGGCCGGACCCGACCCGGCATCTGCAGCCGCCAGGGCTGGCAGGACTCAACTACG
GGCGTCGCACGGCAGTGGCGACAATCATCGGGCATGTCCTCTACGGGCTCGTGCTCGGTGTGTTGCTCCGCTAG

Upstream 100 bases:

>100_bases
GCCGGGACGAACCCTTCTGGCTGGAGCTCCATGGCGAACGGCATCGTGTTCCTCCCGATGGTCGAGGATAGCACCGGTTG
GCGGGGCGGGAGGGCGAGCG

Downstream 100 bases:

>100_bases
TCGGCAGCCAGGCGGAGCGAGGTCGAAGGTGCGCTCGCCTCCTCGAGTGCCAGGGCGGCGCTGATGAGGCCGATGTGGCT
GAAGGCTTGCGGGAAGTTCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MDAILRVLIAGLVATIVLTVVLRGSQLMGLTRMDLPLILGLWVTRDRERAKFVGIFVHILVGWPLAAIYAGVFWLLGGAS
WWLGALLGLGHGAFVLLVVLPGLPGVHPRMASERTGPDPTRHLQPPGLAGLNYGRRTAVATIIGHVLYGLVLGVLLR

Sequences:

>Translated_157_residues
MDAILRVLIAGLVATIVLTVVLRGSQLMGLTRMDLPLILGLWVTRDRERAKFVGIFVHILVGWPLAAIYAGVFWLLGGAS
WWLGALLGLGHGAFVLLVVLPGLPGVHPRMASERTGPDPTRHLQPPGLAGLNYGRRTAVATIIGHVLYGLVLGVLLR
>Mature_157_residues
MDAILRVLIAGLVATIVLTVVLRGSQLMGLTRMDLPLILGLWVTRDRERAKFVGIFVHILVGWPLAAIYAGVFWLLGGAS
WWLGALLGLGHGAFVLLVVLPGLPGVHPRMASERTGPDPTRHLQPPGLAGLNYGRRTAVATIIGHVLYGLVLGVLLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16835; Mature: 16835

Theoretical pI: Translated: 11.84; Mature: 11.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAILRVLIAGLVATIVLTVVLRGSQLMGLTRMDLPLILGLWVTRDRERAKFVGIFVHIL
CHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
VGWPLAAIYAGVFWLLGGASWWLGALLGLGHGAFVLLVVLPGLPGVHPRMASERTGPDPT
HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
RHLQPPGLAGLNYGRRTAVATIIGHVLYGLVLGVLLR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDAILRVLIAGLVATIVLTVVLRGSQLMGLTRMDLPLILGLWVTRDRERAKFVGIFVHIL
CHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
VGWPLAAIYAGVFWLLGGASWWLGALLGLGHGAFVLLVVLPGLPGVHPRMASERTGPDPT
HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
RHLQPPGLAGLNYGRRTAVATIIGHVLYGLVLGVLLR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA