| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221636195
Identifier: 221636195
GI number: 221636195
Start: 773222
End: 774391
Strand: Reverse
Name: 221636195
Synonym: trd_A0789
Alternate gene names: NA
Gene position: 774391-773222 (Counterclockwise)
Preceding gene: 221636196
Following gene: 221636194
Centisome position: 84.38
GC content: 68.8
Gene sequence:
>1170_bases GTGGAGCGACGGCCTCGCCGAGAACGGGTCTTGGCTGCCCTGATCATCCTGGTCCCGCCACTCGCCGGGGTATTACTCTT CGTACCCCGCTGGCGAGCGATCGCGGTGCGGGGGTTGCTGGCTTGGGGGCATGTCGTCCTCGCCCTCGTCGCCTTCCTCT CCTTCGCCGCTGTCAACGCGCAACGCCTCGACCAGGGTGACCGGTACGCCGACCTCGGCATGCTCTTCCTCTTCATCTGG GTCGTCAGCGCCCTCGTGATCCCGTTCGGGTTGGCGATCCGTCAGCTCATCGCTGGGGGCAGCACGAGCGCCGTCCCACG CCCCTGGCGAGTCGCGCTGCGCTTCCGTTCCGACGACAGGACCGAGAGCCTCGCCATGCAGGTAGAACGGTGGCTCGCCG AGCAGAGAGGCGCGCGAGCCGTGAACGGTGGCTGGATCGTCATCGAGCCGACGGTCATCGACGAGCAGAGCATGTGGTCC TCACTGCTCGTGGTCCGCGGGGCGCTCGCGCTGCTGCTGGACAACGACGGAAGGACGATGACCGCGCTCTACCGCGTGTA TCCCCCGTCACGCTGGCCGCTCGCTCGGGACTTCTGGTCGCGTGCTGTCCGCCGCCAGGCCCTCCTGCTCGCCGAACGGT GGAATGCGCGCGTCGAGCCGATCGAGCCGCCGTCGCTGGTGCCGGAGATGGAGGGTGCGCTTGCTGAGGGTGTGCAGCTG GCCTGGGAGCTGGAGCGTCTGGACGTCCGGGGAGTCGACCTGACAGTCACTGCTGTCGTCGCGGTAGTGACACTGGTCCT GGTAGTAACACTTGGGCTGCCACTCTTTCCGACCATGGACGGCGCACTCGTCGGTCTGGCTGGGTTACTCGCCGCTCTGC TGTGCGCGGTGATCCTCAGCGTGGCCTGGCTTGCCTACCACGTACGCGTGTCGCTCCGCGCCTTCGCGGCGGGAAGCGAT CGACCACCGCGGTTCTCGCTCGCCGCGTTCCTCCGGCGCCGTCCGCTGGTGCTGTTCCTCGCCGTCGTCGGCGCAACGGC GTTCGTGGCCAGTCTCGGCTGGGCCACATCACCCAGAGCGCCAGCGTGGGCAGCGCTCGTGAGCGTCGCGGTCCTGGTGC TCCCGCCGCTCGTCGCGCTGTGGCTCGGTACCCGGCTGGCCGAGCAGTAG
Upstream 100 bases:
>100_bases GGCAGCGCGCCAGGCACGCCAGGTCTCGCTCCCGTTACGATAGATTCTGGCGAATGAGAGGATTCCTGACGACGGAAACC CTGTTACGGGGGAGCGCTCA
Downstream 100 bases:
>100_bases TGTCTCTCCCGACCGGATGACCGCCTGGGGAAAGCCTGGCACCGTTCAGGTGTGTGCGGCGCAAGGGGGAAGCTCCCGCG TAGCAGGGCGCGATTCGCTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 389; Mature: 389
Protein sequence:
>389_residues MERRPRRERVLAALIILVPPLAGVLLFVPRWRAIAVRGLLAWGHVVLALVAFLSFAAVNAQRLDQGDRYADLGMLFLFIW VVSALVIPFGLAIRQLIAGGSTSAVPRPWRVALRFRSDDRTESLAMQVERWLAEQRGARAVNGGWIVIEPTVIDEQSMWS SLLVVRGALALLLDNDGRTMTALYRVYPPSRWPLARDFWSRAVRRQALLLAERWNARVEPIEPPSLVPEMEGALAEGVQL AWELERLDVRGVDLTVTAVVAVVTLVLVVTLGLPLFPTMDGALVGLAGLLAALLCAVILSVAWLAYHVRVSLRAFAAGSD RPPRFSLAAFLRRRPLVLFLAVVGATAFVASLGWATSPRAPAWAALVSVAVLVLPPLVALWLGTRLAEQ
Sequences:
>Translated_389_residues MERRPRRERVLAALIILVPPLAGVLLFVPRWRAIAVRGLLAWGHVVLALVAFLSFAAVNAQRLDQGDRYADLGMLFLFIW VVSALVIPFGLAIRQLIAGGSTSAVPRPWRVALRFRSDDRTESLAMQVERWLAEQRGARAVNGGWIVIEPTVIDEQSMWS SLLVVRGALALLLDNDGRTMTALYRVYPPSRWPLARDFWSRAVRRQALLLAERWNARVEPIEPPSLVPEMEGALAEGVQL AWELERLDVRGVDLTVTAVVAVVTLVLVVTLGLPLFPTMDGALVGLAGLLAALLCAVILSVAWLAYHVRVSLRAFAAGSD RPPRFSLAAFLRRRPLVLFLAVVGATAFVASLGWATSPRAPAWAALVSVAVLVLPPLVALWLGTRLAEQ >Mature_389_residues MERRPRRERVLAALIILVPPLAGVLLFVPRWRAIAVRGLLAWGHVVLALVAFLSFAAVNAQRLDQGDRYADLGMLFLFIW VVSALVIPFGLAIRQLIAGGSTSAVPRPWRVALRFRSDDRTESLAMQVERWLAEQRGARAVNGGWIVIEPTVIDEQSMWS SLLVVRGALALLLDNDGRTMTALYRVYPPSRWPLARDFWSRAVRRQALLLAERWNARVEPIEPPSLVPEMEGALAEGVQL AWELERLDVRGVDLTVTAVVAVVTLVLVVTLGLPLFPTMDGALVGLAGLLAALLCAVILSVAWLAYHVRVSLRAFAAGSD RPPRFSLAAFLRRRPLVLFLAVVGATAFVASLGWATSPRAPAWAALVSVAVLVLPPLVALWLGTRLAEQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42602; Mature: 42602
Theoretical pI: Translated: 11.67; Mature: 11.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERRPRRERVLAALIILVPPLAGVLLFVPRWRAIAVRGLLAWGHVVLALVAFLSFAAVNA CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRLDQGDRYADLGMLFLFIWVVSALVIPFGLAIRQLIAGGSTSAVPRPWRVALRFRSDDR HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCH TESLAMQVERWLAEQRGARAVNGGWIVIEPTVIDEQSMWSSLLVVRGALALLLDNDGRTM HHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHEEECCCCCEE TALYRVYPPSRWPLARDFWSRAVRRQALLLAERWNARVEPIEPPSLVPEMEGALAEGVQL EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH AWELERLDVRGVDLTVTAVVAVVTLVLVVTLGLPLFPTMDGALVGLAGLLAALLCAVILS HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH VAWLAYHVRVSLRAFAAGSDRPPRFSLAAFLRRRPLVLFLAVVGATAFVASLGWATSPRA HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCC PAWAALVSVAVLVLPPLVALWLGTRLAEQ HHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MERRPRRERVLAALIILVPPLAGVLLFVPRWRAIAVRGLLAWGHVVLALVAFLSFAAVNA CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRLDQGDRYADLGMLFLFIWVVSALVIPFGLAIRQLIAGGSTSAVPRPWRVALRFRSDDR HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCH TESLAMQVERWLAEQRGARAVNGGWIVIEPTVIDEQSMWSSLLVVRGALALLLDNDGRTM HHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHEEECCCCCEE TALYRVYPPSRWPLARDFWSRAVRRQALLLAERWNARVEPIEPPSLVPEMEGALAEGVQL EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH AWELERLDVRGVDLTVTAVVAVVTLVLVVTLGLPLFPTMDGALVGLAGLLAALLCAVILS HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH VAWLAYHVRVSLRAFAAGSDRPPRFSLAAFLRRRPLVLFLAVVGATAFVASLGWATSPRA HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCC PAWAALVSVAVLVLPPLVALWLGTRLAEQ HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA