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The map label for this gene is torT [H]

Identifier: 221636180

GI number: 221636180

Start: 754775

End: 756058

Strand: Reverse

Name: torT [H]

Synonym: trd_A0774

Alternate gene names: 221636180

Gene position: 756058-754775 (Counterclockwise)

Preceding gene: 221636181

Following gene: 221636179

Centisome position: 82.38

GC content: 62.77

Gene sequence:

>1284_bases
ATGCGAGGAGGGGATACGAAGGATCAGTTCGGGCGACTGACGCGACGTGGTCTCTTGCGCTCGTTGGCAGTGACCAGCGC
CGTGGCAGTGGCTGGTGGTCTCTTGGCTGCTTGCGGCGGAGGCGGGGCGACTCCGACACCGGCGAGCAGTGGTGCCCAGC
CGACTGCCGCGCCAGCTGCGACACCGACGAGCGCTCCAGCTGCTGGAGCGACACCGACAGCGGCGGCCGCGACGGAAGAG
CTCTGGGACGTCGTCGCTTATTACGGCACGTACGACGTCTCGACCAAGCAGCCGGGTCGGCCAGCCGGCAGCTTGCAGGG
GCCGAAGTACGAGAAGTGGACGCGGCCAAAGGCGAACAAGCCGTACATGATCGGCGTCTCGTTCCCGCACCTCAAGGACC
CGTACTGGCTGGCGGTCGATTACGGGATCGTCGACGAAGCACAGATCCTCGGGGTGGGGATCGAGCTGGTCGCGGCCCAG
GGGTACAACGACTTGACTGGGCAAATCAATCAGGTGGAAAACCTGGCCAACCGCGCGGACATCGAGGGGATCATCCTGGC
TGCGATCAGTTACGCCTCGCAGGATCAACTGGTAACCGACATCGTCAAGAACAAGAAGAAGCCGGTGATCGAGGTGATCA
ACGACATCCAGGCGCCAGACATCATGGCCAAGGCGCTGGTGTCGTTCTACGACATGGGGTATGCAGCTGGTCAGTTCGTC
GCGGAAGATTCCGGCGGTCAGGAGGTGACGGTCGTCTTCCTGCCTGGTCCGGCTGGTTCCGGTTGGGCGCCGGATACGGT
GGATGGCTTCAAGGCAGCGGTCGAAGAGAAGGTTCCCGGCAAGGTGAAGATTCTGGACGTCAAGTGGGGCGACACCGGGA
AGGATGTGCAGGTCTCGCTGATCGAGGATGCGCTCAACGCCTATCCCGATGTCACCTACCTCGTCGGGAATGCGGTCGCG
GCCGATGCGGCACCGGACATCCTGGCGAACCGGGCCAAGAAGCCGAAGGTGGTCTCGACCTACATCATCCCGCCGCTCTA
CGACAAGATCGCCGAGGGGAAGGTCGCGGCAGCACCGACGGACTTCACGGCTCTCCAAGGGCGCATGGCGGTGGACATGA
TGGTGCGGATCCTGAATGGGGAGAAGCCGGGCGTGGATTTCCCGTTCCGGGCTGGACCGATCATCAAGGTGGTCACGCCC
AAGAACTACAAGGAGTTCAAGTATGAAGACATGTTCGGTCCGCGTGATTTCCGTCCGGTCTTCTCGGTGAAGCCGAAGGC
GTGA

Upstream 100 bases:

>100_bases
TCGAGCACGCGTCTCGTTTTCGGCACATGGATGGGATGGTCGCCATTCCCTGGCTTTCCGCCAGGGAATGGCACGAGTAG
CTGGACGAAGGAGCGAGAGG

Downstream 100 bases:

>100_bases
CGAGGCCGACGCATGGCGGAGCTCCTGCGGGCCATCGAGGTCTCCAAGCGCTTCCCGGGTGTGCTCGCTCTCGACCGGGT
CTCGTTCGAGCTGCGTGCCG

Product: periplasmic binding protein/LacI transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MRGGDTKDQFGRLTRRGLLRSLAVTSAVAVAGGLLAACGGGGATPTPASSGAQPTAAPAATPTSAPAAGATPTAAAATEE
LWDVVAYYGTYDVSTKQPGRPAGSLQGPKYEKWTRPKANKPYMIGVSFPHLKDPYWLAVDYGIVDEAQILGVGIELVAAQ
GYNDLTGQINQVENLANRADIEGIILAAISYASQDQLVTDIVKNKKKPVIEVINDIQAPDIMAKALVSFYDMGYAAGQFV
AEDSGGQEVTVVFLPGPAGSGWAPDTVDGFKAAVEEKVPGKVKILDVKWGDTGKDVQVSLIEDALNAYPDVTYLVGNAVA
ADAAPDILANRAKKPKVVSTYIIPPLYDKIAEGKVAAAPTDFTALQGRMAVDMMVRILNGEKPGVDFPFRAGPIIKVVTP
KNYKEFKYEDMFGPRDFRPVFSVKPKA

Sequences:

>Translated_427_residues
MRGGDTKDQFGRLTRRGLLRSLAVTSAVAVAGGLLAACGGGGATPTPASSGAQPTAAPAATPTSAPAAGATPTAAAATEE
LWDVVAYYGTYDVSTKQPGRPAGSLQGPKYEKWTRPKANKPYMIGVSFPHLKDPYWLAVDYGIVDEAQILGVGIELVAAQ
GYNDLTGQINQVENLANRADIEGIILAAISYASQDQLVTDIVKNKKKPVIEVINDIQAPDIMAKALVSFYDMGYAAGQFV
AEDSGGQEVTVVFLPGPAGSGWAPDTVDGFKAAVEEKVPGKVKILDVKWGDTGKDVQVSLIEDALNAYPDVTYLVGNAVA
ADAAPDILANRAKKPKVVSTYIIPPLYDKIAEGKVAAAPTDFTALQGRMAVDMMVRILNGEKPGVDFPFRAGPIIKVVTP
KNYKEFKYEDMFGPRDFRPVFSVKPKA
>Mature_427_residues
MRGGDTKDQFGRLTRRGLLRSLAVTSAVAVAGGLLAACGGGGATPTPASSGAQPTAAPAATPTSAPAAGATPTAAAATEE
LWDVVAYYGTYDVSTKQPGRPAGSLQGPKYEKWTRPKANKPYMIGVSFPHLKDPYWLAVDYGIVDEAQILGVGIELVAAQ
GYNDLTGQINQVENLANRADIEGIILAAISYASQDQLVTDIVKNKKKPVIEVINDIQAPDIMAKALVSFYDMGYAAGQFV
AEDSGGQEVTVVFLPGPAGSGWAPDTVDGFKAAVEEKVPGKVKILDVKWGDTGKDVQVSLIEDALNAYPDVTYLVGNAVA
ADAAPDILANRAKKPKVVSTYIIPPLYDKIAEGKVAAAPTDFTALQGRMAVDMMVRILNGEKPGVDFPFRAGPIIKVVTP
KNYKEFKYEDMFGPRDFRPVFSVKPKA

Specific function: Upon binding a putative inducer it probably interacts with torS and allows it to play a role in the induction of the torCAD operon for trimethylamine N-oxide reductase [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787228, Length=307, Percent_Identity=30.2931596091205, Blast_Score=142, Evalue=3e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761
- InterPro:   IPR014301 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 45135; Mature: 45135

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGGDTKDQFGRLTRRGLLRSLAVTSAVAVAGGLLAACGGGGATPTPASSGAQPTAAPAA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
TPTSAPAAGATPTAAAATEELWDVVAYYGTYDVSTKQPGRPAGSLQGPKYEKWTRPKANK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCHHCCCCCCCC
PYMIGVSFPHLKDPYWLAVDYGIVDEAQILGVGIELVAAQGYNDLTGQINQVENLANRAD
CEEEEECCCCCCCCEEEEEECCCCCCCCEEEECEEEEEECCCCCHHHHHHHHHHHHHHCC
IEGIILAAISYASQDQLVTDIVKNKKKPVIEVINDIQAPDIMAKALVSFYDMGYAAGQFV
CCCEEEEHHHHCCHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCHHHCCEE
AEDSGGQEVTVVFLPGPAGSGWAPDTVDGFKAAVEEKVPGKVKILDVKWGDTGKDVQVSL
EECCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEHH
IEDALNAYPDVTYLVGNAVAADAAPDILANRAKKPKVVSTYIIPPLYDKIAEGKVAAAPT
HHHHHHHCCCEEEECCCHHHCCCCHHHHHHCCCCCCEEEEEECCHHHHHHHCCCEEECCC
DFTALQGRMAVDMMVRILNGEKPGVDFPFRAGPIIKVVTPKNYKEFKYEDMFGPRDFRPV
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCCCC
FSVKPKA
CCCCCCC
>Mature Secondary Structure
MRGGDTKDQFGRLTRRGLLRSLAVTSAVAVAGGLLAACGGGGATPTPASSGAQPTAAPAA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
TPTSAPAAGATPTAAAATEELWDVVAYYGTYDVSTKQPGRPAGSLQGPKYEKWTRPKANK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCHHCCCCCCCC
PYMIGVSFPHLKDPYWLAVDYGIVDEAQILGVGIELVAAQGYNDLTGQINQVENLANRAD
CEEEEECCCCCCCCEEEEEECCCCCCCCEEEECEEEEEECCCCCHHHHHHHHHHHHHHCC
IEGIILAAISYASQDQLVTDIVKNKKKPVIEVINDIQAPDIMAKALVSFYDMGYAAGQFV
CCCEEEEHHHHCCHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCHHHCCEE
AEDSGGQEVTVVFLPGPAGSGWAPDTVDGFKAAVEEKVPGKVKILDVKWGDTGKDVQVSL
EECCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEHH
IEDALNAYPDVTYLVGNAVAADAAPDILANRAKKPKVVSTYIIPPLYDKIAEGKVAAAPT
HHHHHHHCCCEEEECCCHHHCCCCHHHHHHCCCCCCEEEEEECCHHHHHHHCCCEEECCC
DFTALQGRMAVDMMVRILNGEKPGVDFPFRAGPIIKVVTPKNYKEFKYEDMFGPRDFRPV
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCCCC
FSVKPKA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]